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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00198
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00198
Identity
- Kingdom:
- phage
Quality
94.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-10_19-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27386.1 best | YonJ_N | 29.3 | 7.10e-07 | 86.2% | 58.6% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 53.0 | 5.40e-01 | 86.2% | 78.2% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 50.0 | 5.48e-01 | 84.5% | 97.7% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 5.06e-01 | 84.5% | 76.2% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 52.0 | 3.80e-01 | 87.9% | 50.6% |
| 6vhyA02 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.65 | 48.0 | 4.60e-01 | 79.3% | 85.3% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 4.68e-01 | 81.0% | 71.6% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.46e-01 | 81.0% | 61.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 49.0 | 4.53e-01 | 84.5% | 64.1% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.17e-01 | 81.0% | 57.6% |
| 2r7aB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.64 | 43.0 | 3.40e-01 | 70.7% | 86.9% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.63 | 49.0 | 4.16e-01 | 86.2% | 81.8% |
| 2liuA01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.63 | 48.0 | 4.32e-01 | 86.2% | 82.4% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 46.0 | 4.45e-01 | 82.8% | 74.2% |
| 1u78A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 4.38e-01 | 84.5% | 93.3% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 44.0 | 4.69e-01 | 81.0% | 98.0% |
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.58 | 44.0 | 3.89e-01 | 86.2% | 66.3% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.83e-01 | 81.0% | 54.5% |
| 7y4rB01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 46.0 | 4.01e-01 | 100.0% | 81.1% |
| 3ol4A02 | 1.10.10.2390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 41.0 | 4.16e-01 | 84.5% | 83.3% |
| 3u7qB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 46.0 | 3.58e-01 | 100.0% | 52.1% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 40.0 | 3.85e-01 | 81.0% | 72.1% |
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.54 | 37.0 | 3.46e-01 | 75.9% | 60.5% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.53 | 42.0 | 3.16e-01 | 87.9% | 96.7% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 43.0 | 2.95e-01 | 96.6% | 81.3% |
| 2qm3A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.42e-01 | 84.5% | 72.3% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.50 | 36.0 | 3.06e-01 | 79.3% | 78.5% |
ECOD (77)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014657 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 67.0 | 6.87e-01 | 82.8% | 89.1% |
| 3636036 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 65.0 | 6.44e-01 | 82.8% | 86.7% |
| 3590733 | 101.1.2.489 ↗ | alpha arrays › HTH › HTH › winged helix domain › Transposase_mut | 0.83 | 57.0 | 6.13e-01 | 74.1% | 84.0% |
| 4978113 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.82 | 62.0 | 6.56e-01 | 81.0% | 94.0% |
| 3723123 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 63.0 | 6.25e-01 | 82.8% | 81.7% |
| 3730184 | 101.1.1.256 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Clr5 | 0.81 | 64.0 | 6.55e-01 | 84.5% | 92.7% |
| 5013811 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 61.0 | 6.31e-01 | 82.8% | 85.5% |
| 3740014 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 64.0 | 6.08e-01 | 87.9% | 75.7% |
| 4105352 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.80 | 61.0 | 3.88e-01 | 82.8% | 96.4% |
| 3980764 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 58.0 | 6.34e-01 | 81.0% | 100.0% |
| 5052263 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 63.0 | 5.77e-01 | 86.2% | 73.3% |
| 5047162 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 58.0 | 5.58e-01 | 77.6% | 69.2% |
| 3684956 | 101.1.1.256 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Clr5 | 0.79 | 62.0 | 5.96e-01 | 84.5% | 76.9% |
| 5049118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 60.0 | 5.83e-01 | 82.8% | 75.4% |
| 4978898 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 57.0 | 6.34e-01 | 77.6% | 100.0% |
| 3730705 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 61.0 | 6.49e-01 | 84.5% | 98.0% |
| 4927588 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 61.0 | 5.55e-01 | 82.8% | 64.0% |
| 3709551 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 61.0 | 6.03e-01 | 82.8% | 80.0% |
| 5053360 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 60.0 | 5.33e-01 | 84.5% | 83.5% |
| 3609939 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.78 | 60.0 | 4.90e-01 | 82.8% | 46.7% |
| 3958338 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.78 | 56.0 | 6.17e-01 | 82.8% | 100.0% |
| 3960420 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.78 | 63.0 | 4.84e-01 | 87.9% | 60.0% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.78 | 59.0 | 6.29e-01 | 82.8% | 100.0% |
| 3961039 | 101.1.3.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut | 0.78 | 55.0 | 6.11e-01 | 79.3% | 97.8% |
| 2393452 | 101.43.1.1 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N | 0.77 | 62.0 | 6.30e-01 | 87.9% | 94.6% |
| 4129352 | 101.1.1.32 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD | 0.77 | 60.0 | 5.81e-01 | 84.5% | 84.6% |
| 4979322 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.77 | 58.0 | 5.46e-01 | 81.0% | 75.7% |
| 3575777 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.77 | 57.0 | 6.10e-01 | 79.3% | 94.0% |
| 3589089 | 101.1.2.489 ↗ | alpha arrays › HTH › HTH › winged helix domain › Transposase_mut | 0.77 | 60.0 | 4.89e-01 | 84.5% | 72.4% |
| 3933926 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 60.0 | 5.78e-01 | 84.5% | 75.4% |
| 5079851 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 58.0 | 5.80e-01 | 82.8% | 83.3% |
| 5049604 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 57.0 | 5.86e-01 | 82.8% | 85.5% |
| 3687180 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 57.0 | 6.02e-01 | 82.8% | 96.0% |
| 3198858 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 58.0 | 5.46e-01 | 82.8% | 71.4% |
| 3618803 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 57.0 | 5.69e-01 | 81.0% | 81.7% |
| 4959187 | 101.1.2.489 ↗ | alpha arrays › HTH › HTH › winged helix domain › Transposase_mut | 0.76 | 55.0 | 5.78e-01 | 81.0% | 90.0% |
| 4926838 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.76 | 60.0 | 5.79e-01 | 86.2% | 84.6% |
| 3962579 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 61.0 | 4.54e-01 | 87.9% | 53.6% |
| 3910504 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 55.0 | 5.88e-01 | 81.0% | 92.0% |
| 3962597 | 101.1.3.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut | 0.75 | 55.0 | 5.36e-01 | 84.5% | 70.8% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.75 | 59.0 | 6.08e-01 | 86.2% | 94.5% |
| 3724068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 57.0 | 5.89e-01 | 84.5% | 90.9% |
| 3958041 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 55.0 | 5.36e-01 | 84.5% | 70.8% |
| 3957316 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.75 | 55.0 | 5.35e-01 | 84.5% | 70.8% |
| 3617137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 58.0 | 5.92e-01 | 84.5% | 98.2% |
| 5070167 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 56.0 | 5.77e-01 | 81.0% | 85.5% |
| 3740038 | 101.1.1.256 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Clr5 | 0.74 | 55.0 | 5.86e-01 | 81.0% | 96.0% |
| 5028095 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.74 | 57.0 | 4.68e-01 | 84.5% | 70.5% |
| 5029224 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 56.0 | 5.55e-01 | 82.8% | 80.0% |
| 4017273 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 54.0 | 5.56e-01 | 81.0% | 87.3% |
| 4960595 | 101.1.1.549 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_5 | 0.73 | 58.0 | 5.27e-01 | 87.9% | 95.0% |
| 3589159 | 101.1.2.488 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDE_Tnp_IS66 | 0.73 | 54.0 | 5.00e-01 | 79.3% | 62.7% |
| 4274627 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.73 | 58.0 | 5.74e-01 | 86.2% | 90.0% |
| 4929815 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 55.0 | 5.34e-01 | 82.8% | 73.8% |
| 3793542 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 55.0 | 5.51e-01 | 84.5% | 83.3% |
| 5006610 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 54.0 | 5.40e-01 | 84.5% | 78.3% |
| 3243611 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 53.0 | 5.58e-01 | 82.8% | 92.0% |
| 5070907 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 52.0 | 5.70e-01 | 81.0% | 100.0% |
| 4167899 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.71 | 52.0 | 5.35e-01 | 81.0% | 83.6% |
| 3948842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 53.0 | 5.43e-01 | 82.8% | 89.1% |
| 5077022 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.71 | 54.0 | 4.57e-01 | 84.5% | 55.0% |
| 3291410 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.70 | 54.0 | 5.00e-01 | 86.2% | 73.3% |
| 4958195 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 53.0 | 5.42e-01 | 82.8% | 92.7% |
| 3386943 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.70 | 62.0 | 4.87e-01 | 100.0% | 72.5% |
| 5058272 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.69 | 49.0 | 5.32e-01 | 79.3% | 100.0% |
| 5010815 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.69 | 48.0 | 3.72e-01 | 74.1% | 41.5% |
| 4978899 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 4.71e-01 | 86.2% | 92.5% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.66 | 57.0 | 4.79e-01 | 98.3% | 76.0% |
| 4863786 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.65 | 51.0 | 5.20e-01 | 84.5% | 90.9% |
| 3228613 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 47.0 | 4.02e-01 | 86.2% | 62.9% |
| 4954458 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.32e-01 | 87.9% | 84.0% |
| 5040582 | 129.1.1.2 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH | 0.60 | 45.0 | 4.17e-01 | 86.2% | 83.7% |
| 3586770 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 44.0 | 4.56e-01 | 86.2% | 90.9% |
| 3230169 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.58 | 42.0 | 3.47e-01 | 82.8% | 61.7% |
| 4928812 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.57 | 43.0 | 3.76e-01 | 84.5% | 76.8% |
| 5046154 | 129.1.1.2 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH | 0.56 | 42.0 | 3.90e-01 | 86.2% | 88.6% |
| 3583980 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 3.49e-01 | 87.9% | 52.4% |