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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00211
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00211
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-73
Domain cluster:
rep: MW015081.1__QPX48081.1__X__00116__D1-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01327.27 best | Pep_deformylase | 30.7 | 3.10e-07 | 100.0% | 35.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.92 | 74.0 | 5.40e-01 | 100.0% | 35.9% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.89 | 76.0 | 5.67e-01 | 100.0% | 39.6% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.87 | 77.0 | 5.61e-01 | 100.0% | 38.1% |
| 3g5kA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 79.0 | 5.62e-01 | 100.0% | 46.4% |
| 1zxzB00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 79.0 | 5.54e-01 | 100.0% | 44.0% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 71.0 | 5.50e-01 | 100.0% | 43.8% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 79.0 | 5.67e-01 | 100.0% | 40.7% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.83 | 76.0 | 5.39e-01 | 100.0% | 43.2% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.81 | 75.0 | 5.43e-01 | 100.0% | 43.3% |
| 3e3uA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.80 | 74.0 | 5.19e-01 | 100.0% | 37.2% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.70 | 53.0 | 4.66e-01 | 82.1% | 78.8% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.60 | 41.0 | 3.29e-01 | 73.1% | 36.4% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.40e-01 | 73.1% | 83.0% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 40.0 | 2.87e-01 | 79.1% | 82.9% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 47.0 | 3.76e-01 | 97.0% | 50.7% |
| 3ctzA02 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.53 | 42.0 | 3.19e-01 | 86.6% | 59.8% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.53 | 46.0 | 3.80e-01 | 97.0% | 70.8% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 40.0 | 3.00e-01 | 86.6% | 64.0% |
| 4clfA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 40.0 | 3.05e-01 | 86.6% | 66.8% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 37.0 | 3.08e-01 | 82.1% | 77.0% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.50 | 43.0 | 3.00e-01 | 98.5% | 83.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4133607 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 80.0 | 5.81e-01 | 100.0% | 39.4% |
| 4030761 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 79.0 | 5.81e-01 | 100.0% | 39.4% |
| 4256308 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 80.0 | 5.88e-01 | 100.0% | 40.0% |
| 4039287 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 80.0 | 5.74e-01 | 100.0% | 37.6% |
| 3607053 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 77.0 | 5.02e-01 | 100.0% | 24.9% |
| 4275485 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 78.0 | 5.65e-01 | 100.0% | 37.1% |
| 3966296 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.89 | 79.0 | 5.78e-01 | 100.0% | 38.8% |
| 4325293 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.71e-01 | 100.0% | 41.6% |
| 4096233 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.83e-01 | 100.0% | 39.7% |
| 4086694 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 76.0 | 5.72e-01 | 100.0% | 42.0% |
| 981342 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 79.0 | 5.61e-01 | 100.0% | 36.3% |
| 2121396 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 73.0 | 5.61e-01 | 100.0% | 43.8% |
| 3596563 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.86 | 76.0 | 5.20e-01 | 100.0% | 30.0% |
| 167197 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 79.0 | 5.47e-01 | 100.0% | 43.9% |
| 3336542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 80.0 | 6.52e-01 | 100.0% | 73.0% |
| 3440362 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 80.0 | 5.59e-01 | 100.0% | 44.2% |
| 3401134 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 79.0 | 5.57e-01 | 100.0% | 45.0% |
| 4420329 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 79.0 | 5.59e-01 | 100.0% | 38.9% |
| 3309735 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 77.0 | 6.10e-01 | 100.0% | 51.2% |
| 140542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 79.0 | 5.62e-01 | 100.0% | 41.9% |
| 4443928 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 75.0 | 5.28e-01 | 100.0% | 33.7% |
| 3427612 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 5.45e-01 | 100.0% | 35.7% |
| 4470382 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 79.0 | 5.59e-01 | 100.0% | 41.7% |
| 2579249 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 78.0 | 5.77e-01 | 100.0% | 46.5% |
| 4999343 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 78.0 | 5.66e-01 | 100.0% | 40.0% |
| 168447 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 5.45e-01 | 100.0% | 35.9% |
| 3276058 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 5.59e-01 | 100.0% | 43.5% |
| 3693404 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 5.42e-01 | 100.0% | 36.3% |
| 3710708 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.83 | 76.0 | 5.26e-01 | 100.0% | 33.7% |
| 4628922 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.83 | 76.0 | 5.46e-01 | 100.0% | 41.9% |
| 4113678 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 75.0 | 5.37e-01 | 100.0% | 44.6% |
| 1877349 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 76.0 | 5.53e-01 | 100.0% | 41.4% |
| 4224338 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 75.0 | 5.29e-01 | 100.0% | 41.1% |
| 4165265 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 74.0 | 5.16e-01 | 100.0% | 38.7% |
| 4220705 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 73.0 | 5.29e-01 | 100.0% | 40.6% |
| 170021 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 74.0 | 5.19e-01 | 100.0% | 37.2% |
| 4336204 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 72.0 | 5.14e-01 | 100.0% | 47.6% |
| 4215094 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 72.0 | 5.15e-01 | 100.0% | 42.7% |
| 4304576 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.77 | 69.0 | 4.91e-01 | 100.0% | 41.0% |
| 4960195 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.67 | 46.0 | 4.44e-01 | 83.6% | 64.0% |
| 2641638 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 43.0 | 3.06e-01 | 86.6% | 61.7% |
| 3400623 | 284.1.3.13 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › PF30019 | 0.55 | 38.0 | 3.72e-01 | 100.0% | 64.0% |
| 2667421 | 286.1.1.5 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N | 0.55 | 47.0 | 3.66e-01 | 97.0% | 46.3% |
| 4114152 | 4099.1.1.32 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 | 0.55 | 37.0 | 3.58e-01 | 100.0% | 62.7% |
| 5053076 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 41.0 | 3.02e-01 | 80.6% | 85.1% |
| 3998469 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.51 | 39.0 | 3.19e-01 | 89.6% | 95.2% |