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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00214

Bact-Vir

PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00214

Identity

Kingdom:
phage

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.73 43.0 3.61e-01 80.7% 35.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.07e-01 82.5% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 4.69e-01 94.7% 86.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 38.0 2.73e-01 86.0% 21.1%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.02e-01 93.0% 83.9%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 53.0 4.05e-01 100.0% 66.9%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.96e-01 93.0% 82.8%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.20e-01 84.2% 69.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.89e-01 98.2% 97.0%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.71e-01 94.7% 60.6%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.55e-01 94.7% 65.6%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 43.0 3.38e-01 80.7% 72.1%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.58e-01 100.0% 84.2%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.36e-01 84.2% 88.8%
1v7lA01 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 43.0 3.16e-01 82.5% 86.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.79e-01 89.5% 77.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.57e-01 96.5% 94.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.17e-01 94.7% 73.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.25e-01 96.5% 87.8%
1ud2A02 2.40.30.140 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 44.0 3.73e-01 93.0% 71.6%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 4.26e-01 98.2% 79.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 3.55e-01 94.7% 48.7%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.84e-01 100.0% 100.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 42.0 3.48e-01 91.2% 75.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 42.0 3.44e-01 98.2% 92.2%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.53e-01 93.0% 82.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 45.0 3.62e-01 100.0% 89.8%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 41.0 2.72e-01 89.5% 34.6%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 44.0 3.20e-01 100.0% 94.3%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.10e-01 93.0% 45.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 39.0 3.59e-01 87.7% 72.2%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.66e-01 100.0% 99.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.68e-01 98.2% 82.3%
2orzA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.17e-01 96.5% 66.0%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 37.0 2.39e-01 82.5% 38.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 54.0 4.87e-01 89.5% 84.7%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 57.0 4.66e-01 96.5% 78.9%
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.63e-01 93.0% 100.0%
3393055 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 53.0 4.30e-01 94.7% 80.8%
3729232 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.65 49.0 3.37e-01 80.7% 72.3%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.69e-01 91.2% 77.5%
3765367 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 51.0 3.96e-01 96.5% 61.3%
3934695 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.64 52.0 4.49e-01 94.7% 88.4%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 48.0 3.68e-01 86.0% 41.4%
3749038 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 50.0 3.90e-01 94.7% 82.9%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 50.0 4.53e-01 91.2% 75.0%
3750304 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 50.0 4.09e-01 96.5% 76.7%
3218911 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 3.94e-01 94.7% 64.4%
4938399 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 49.0 4.13e-01 96.5% 82.7%
None — 0.61 51.0 3.79e-01 100.0% 74.5%
3754984 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 3.62e-01 100.0% 63.1%
3710438 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 49.0 4.02e-01 94.7% 77.4%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 4.04e-01 96.5% 86.1%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.60 52.0 3.98e-01 98.2% 74.4%
3592269 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.77e-01 93.0% 85.9%
3992625 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.17e-01 94.7% 72.4%
3408641 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 3.87e-01 96.5% 74.6%
3766449 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 4.01e-01 94.7% 77.3%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.92e-01 94.7% 73.0%
3628059 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 3.89e-01 94.7% 69.6%
3777833 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.70e-01 96.5% 60.7%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 3.92e-01 100.0% 73.1%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.58 44.0 4.12e-01 87.7% 96.0%
4028811 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 49.0 3.97e-01 98.2% 77.4%
3522290 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 3.72e-01 96.5% 72.8%
5031715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.57e-01 94.7% 67.4%
3713222 220.1.1.263 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.56 47.0 3.83e-01 94.7% 75.5%
3597379 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.84e-01 96.5% 81.8%
3782145 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.56 45.0 3.96e-01 96.5% 88.4%
3535752 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.19e-01 82.5% 50.7%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.56 45.0 4.25e-01 96.5% 87.8%
3171382 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.56 44.0 3.98e-01 96.5% 94.4%
3813944 375.4.1.4 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › Zn_ribbon_15 0.55 38.0 3.46e-01 71.9% 58.7%
4197307 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 47.0 3.46e-01 100.0% 97.6%
3597001 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 46.0 3.32e-01 96.5% 77.1%
4957571 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.55 41.0 3.33e-01 87.7% 92.3%
3900957 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 3.60e-01 100.0% 65.4%
3743741 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.55 45.0 4.06e-01 100.0% 85.9%
3503754 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.36e-01 96.5% 72.0%
3722745 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.54 46.0 4.20e-01 100.0% 92.5%
4945617 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 46.0 3.39e-01 100.0% 84.4%
3707991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.30e-01 98.2% 91.3%
3247824 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.62e-01 96.5% 74.3%
3243776 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 44.0 3.68e-01 100.0% 85.5%
3495962 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.52e-01 94.7% 78.3%
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.41e-01 96.5% 81.6%
3961371 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 42.0 3.95e-01 100.0% 81.2%
3399448 2011.1.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.52 40.0 2.56e-01 86.0% 35.9%
3564421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.41e-01 94.7% 83.5%
3714935 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 42.0 3.19e-01 96.5% 79.4%
2126755 9.28.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C 0.52 43.0 3.55e-01 100.0% 83.6%
3998029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.56e-01 100.0% 80.0%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 2.96e-01 94.7% 52.4%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.51 43.0 3.94e-01 100.0% 90.0%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.42e-01 96.5% 75.0%
4890881 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.51 41.0 3.34e-01 96.5% 81.0%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.51 40.0 3.25e-01 96.5% 70.8%
4872941 10.2.1.43 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.50 39.0 3.23e-01 91.2% 75.6%
3936054 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.50 41.0 3.43e-01 96.5% 86.4%
3552040 4099.1.1.30 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_C 0.50 42.0 3.21e-01 96.5% 60.0%
3094739 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.50 42.0 3.23e-01 96.5% 65.7%