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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00247

Bact-Vir

PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00247

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 29.9 8.30e-07 90.9% 16.4%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oisB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.93 88.0 5.63e-01 100.0% 29.2%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 78.0 5.36e-01 100.0% 36.6%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 77.0 4.88e-01 100.0% 26.2%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 77.0 4.88e-01 100.0% 25.7%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 74.0 5.09e-01 100.0% 35.6%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 74.0 4.43e-01 100.0% 24.0%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 73.0 4.51e-01 100.0% 28.0%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.79 73.0 4.40e-01 100.0% 24.1%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.78 73.0 4.84e-01 100.0% 34.2%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.78 71.0 4.38e-01 100.0% 21.8%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.78 70.0 4.64e-01 100.0% 31.8%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.77 70.0 4.66e-01 100.0% 36.7%
1act000 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.77 70.0 4.77e-01 100.0% 35.8%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.76 70.0 4.78e-01 100.0% 34.0%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.75 57.0 5.67e-01 97.0% 76.8%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 68.0 4.43e-01 100.0% 31.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 45.0 4.91e-01 100.0% 84.6%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 42.0 4.78e-01 92.4% 87.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 43.0 4.87e-01 100.0% 89.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 45.0 4.92e-01 100.0% 85.2%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 3.94e-01 100.0% 50.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 4.93e-01 98.5% 97.9%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.03e-01 100.0% 91.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 5.02e-01 100.0% 89.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 52.0 3.62e-01 100.0% 27.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.50e-01 100.0% 65.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.73e-01 100.0% 80.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.22e-01 100.0% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.78e-01 100.0% 86.8%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.79e-01 100.0% 85.7%
4h3sA03 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.55 40.0 3.38e-01 77.3% 92.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.96e-01 98.5% 84.1%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 43.0 3.34e-01 100.0% 86.9%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 38.0 2.99e-01 84.8% 86.1%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960361 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.92 86.0 5.45e-01 100.0% 31.4%
3277753 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.90 84.0 5.42e-01 100.0% 29.0%
3244679 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.88 81.0 4.92e-01 100.0% 21.2%
3519107 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 81.0 5.01e-01 100.0% 22.2%
3620332 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 80.0 4.92e-01 100.0% 20.8%
3250297 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 81.0 5.14e-01 100.0% 27.1%
3938586 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 79.0 5.13e-01 100.0% 30.8%
3495032 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 80.0 5.40e-01 100.0% 34.9%
3510485 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 79.0 4.90e-01 100.0% 23.7%
3479869 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.85 79.0 4.93e-01 100.0% 23.5%
3656345 219.1.1.2 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 0.85 79.0 4.86e-01 100.0% 22.4%
3242975 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 78.0 4.84e-01 100.0% 22.1%
5034502 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 78.0 5.23e-01 100.0% 34.2%
3723538 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 78.0 4.88e-01 100.0% 27.2%
4047160 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 77.0 5.12e-01 100.0% 32.5%
4021473 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 77.0 5.06e-01 100.0% 30.8%
3803520 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 77.0 6.18e-01 100.0% 67.5%
4978305 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 76.0 4.86e-01 100.0% 24.7%
3906939 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 77.0 4.84e-01 100.0% 27.2%
3486878 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.82 76.0 4.76e-01 100.0% 27.4%
3806552 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.82 75.0 5.46e-01 100.0% 57.1%
3679431 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 75.0 4.74e-01 100.0% 26.0%
3481577 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 75.0 4.96e-01 100.0% 32.5%
3776905 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 75.0 4.86e-01 100.0% 36.2%
3421122 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 74.0 4.87e-01 100.0% 32.8%
3234755 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 74.0 4.95e-01 100.0% 31.3%
3865831 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 74.0 4.63e-01 100.0% 28.9%
3488949 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 74.0 4.94e-01 100.0% 32.8%
3579978 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 74.0 5.87e-01 100.0% 61.6%
3996394 4.8.1.39 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_C1 0.80 73.0 6.55e-01 100.0% 85.6%
3884055 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.80 73.0 4.83e-01 100.0% 31.0%
3216614 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 73.0 4.56e-01 100.0% 25.8%
3260560 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 72.0 4.74e-01 100.0% 29.4%
3567565 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 74.0 4.68e-01 100.0% 25.5%
3699969 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 73.0 4.71e-01 100.0% 37.8%
3705335 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 73.0 4.75e-01 100.0% 31.9%
3401763 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 73.0 4.84e-01 100.0% 30.7%
3836765 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 72.0 4.85e-01 100.0% 34.2%
3807595 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 73.0 4.50e-01 100.0% 23.5%
5033092 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 72.0 4.65e-01 100.0% 26.4%
3304778 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 72.0 4.88e-01 100.0% 35.6%
3252600 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 72.0 4.96e-01 100.0% 35.6%
3574352 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.79 73.0 6.01e-01 100.0% 72.7%
3317119 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 72.0 4.75e-01 100.0% 32.0%
3891882 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.79 71.0 4.60e-01 100.0% 29.5%
3793700 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.78 72.0 5.32e-01 100.0% 50.0%
3798944 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 71.0 4.73e-01 100.0% 32.4%
4024702 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 71.0 4.70e-01 100.0% 34.5%
3791026 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 72.0 4.51e-01 100.0% 26.2%
4268173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 71.0 4.37e-01 100.0% 21.6%
3650468 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.78 71.0 5.27e-01 100.0% 49.4%
3299435 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 71.0 4.51e-01 100.0% 26.8%
None — 0.78 71.0 4.44e-01 100.0% 24.8%
3319851 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 70.0 4.86e-01 100.0% 38.1%
3668220 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 70.0 4.50e-01 100.0% 27.2%
None — 0.77 71.0 4.41e-01 100.0% 22.9%
3699843 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 71.0 4.46e-01 100.0% 23.5%
3299336 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 70.0 4.45e-01 100.0% 26.8%
None — 0.77 70.0 6.29e-01 100.0% 85.4%
4029993 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 71.0 4.23e-01 100.0% 20.2%
4429823 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 71.0 4.46e-01 100.0% 21.7%
4030613 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 71.0 4.60e-01 100.0% 31.7%
2076995 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 70.0 4.71e-01 100.0% 33.0%
3233596 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 70.0 4.58e-01 100.0% 27.7%
3710887 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.77 70.0 4.86e-01 100.0% 36.0%
4415790 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 70.0 4.50e-01 100.0% 29.5%
3803751 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 69.0 4.74e-01 100.0% 34.4%
3669025 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 59.0 3.85e-01 83.3% 23.4%
3331216 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.75 68.0 5.18e-01 100.0% 55.3%
4779630 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.75 57.0 5.67e-01 97.0% 76.8%
5016488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.58e-01 95.5% 96.7%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 3.99e-01 100.0% 48.0%
3737805 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 49.0 4.77e-01 100.0% 93.3%
3513850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.94e-01 100.0% 67.4%