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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00276

Bact-Vir

PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00276

Identity

Kingdom:
phage

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-95
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.27e-01 80.0% 87.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 5.10e-01 88.0% 77.9%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.05e-01 90.0% 93.2%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 3.92e-01 80.0% 81.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.16e-01 88.0% 95.2%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.69 46.0 3.53e-01 80.0% 30.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.17e-01 100.0% 81.2%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 54.0 4.00e-01 92.0% 75.2%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 4.70e-01 100.0% 56.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.03e-01 100.0% 66.3%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 52.0 3.57e-01 90.0% 63.8%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 48.0 5.07e-01 78.0% 100.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.66 49.0 3.29e-01 82.0% 50.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.01e-01 100.0% 76.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.70e-01 86.0% 78.1%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 47.0 4.82e-01 78.0% 83.0%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 47.0 3.72e-01 82.0% 67.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.20e-01 98.0% 93.2%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.77e-01 82.0% 82.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 4.34e-01 94.0% 69.0%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 50.0 4.22e-01 94.0% 69.2%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.62 43.0 3.28e-01 80.0% 29.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 5.07e-01 100.0% 100.0%
1maeL00 2.60.30.10 Mainly Beta › Sandwich › Electron Transport Ethylamine Dehydrogenase › Methylamine/Aralkylamine dehydrogenase light chain 0.60 43.0 3.31e-01 78.0% 94.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.13e-01 100.0% 91.1%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 48.0 4.14e-01 100.0% 62.4%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 47.0 4.00e-01 94.0% 76.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.64e-01 98.0% 91.9%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 48.0 4.05e-01 94.0% 83.3%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 51.0 4.29e-01 100.0% 72.7%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 46.0 4.45e-01 98.0% 100.0%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.23e-01 82.0% 72.7%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.57 46.0 3.93e-01 90.0% 92.7%
3fjyA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 41.0 2.93e-01 78.0% 75.5%
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.56 35.0 3.72e-01 78.0% 69.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.56 46.0 3.10e-01 100.0% 31.9%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 44.0 3.50e-01 100.0% 91.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.99e-01 84.0% 92.7%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 44.0 3.78e-01 94.0% 79.5%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.55 40.0 3.46e-01 80.0% 64.6%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.74e-01 100.0% 96.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.18e-01 82.0% 80.3%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.33e-01 100.0% 57.2%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 3.64e-01 100.0% 100.0%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 47.0 3.86e-01 100.0% 70.2%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 3.79e-01 100.0% 74.7%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.48e-01 88.0% 74.4%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.52 42.0 3.59e-01 96.0% 54.4%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 3.69e-01 100.0% 69.5%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.52 36.0 3.80e-01 80.0% 100.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 40.0 2.88e-01 92.0% 61.5%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 3.45e-01 100.0% 44.3%
5yv7A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 39.0 3.74e-01 96.0% 71.7%
1tocR02 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 37.0 3.64e-01 100.0% 70.7%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.50 27.0 3.05e-01 76.0% 52.5%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.34e-01 84.0% 74.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 4.80e-01 88.0% 85.6%
3936496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.05e-01 100.0% 59.0%
3830187 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 56.0 5.48e-01 88.0% 94.5%
3577224 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 61.0 5.10e-01 100.0% 64.4%
3515495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.04e-01 100.0% 61.1%
3989651 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.71 63.0 4.16e-01 100.0% 69.3%
3936468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 4.96e-01 100.0% 61.0%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.02e-01 100.0% 65.3%
3535278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.41e-01 92.0% 93.3%
3407821 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 61.0 5.19e-01 100.0% 67.1%
3881119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 62.0 5.30e-01 100.0% 67.5%
3851361 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.70 55.0 4.39e-01 90.0% 71.4%
3492016 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 55.0 4.56e-01 88.0% 60.0%
3768095 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 59.0 4.88e-01 100.0% 60.0%
3547102 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 59.0 5.05e-01 100.0% 67.1%
3266698 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.68 59.0 4.36e-01 100.0% 59.3%
3547084 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 59.0 4.89e-01 100.0% 60.0%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 59.0 4.89e-01 100.0% 61.1%
3407854 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 58.0 4.80e-01 100.0% 57.9%
5037849 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 58.0 4.42e-01 100.0% 71.2%
3394215 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 59.0 4.70e-01 100.0% 65.0%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 58.0 4.60e-01 100.0% 61.0%
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 57.0 4.78e-01 100.0% 64.4%
153172 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 59.0 4.83e-01 100.0% 61.1%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 57.0 4.77e-01 100.0% 62.2%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 56.0 4.55e-01 100.0% 59.0%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.05e-01 100.0% 78.6%
3525406 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 54.0 4.26e-01 98.0% 49.1%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 54.0 4.84e-01 100.0% 77.3%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.10e-01 100.0% 87.7%
3792195 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.46e-01 100.0% 63.0%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.64 48.0 4.20e-01 84.0% 68.8%
4257969 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.04e-01 100.0% 74.4%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 55.0 4.35e-01 100.0% 59.0%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.06e-01 100.0% 96.7%
3433661 375.1.1.51 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.63 44.0 4.81e-01 76.0% 95.0%
3710893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.04e-01 100.0% 62.3%
3934671 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.62 51.0 4.47e-01 100.0% 84.7%
4946798 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 4.12e-01 100.0% 87.0%
4981108 375.1.1.331 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 0.59 42.0 4.35e-01 76.0% 91.1%
3219406 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.24e-01 78.0% 100.0%
3724129 375.1.1.52 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.59 43.0 4.51e-01 80.0% 100.0%
3566431 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.58 42.0 4.02e-01 92.0% 66.7%
4129996 375.1.1.239 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › UPF0515 0.58 42.0 4.57e-01 84.0% 100.0%
4952531 375.1.2.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › Desulfoferrod_N 0.58 40.0 4.35e-01 78.0% 92.5%
5033270 375.1.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.57 38.0 4.11e-01 74.0% 97.1%
3453727 375.1.1.52 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.57 42.0 4.01e-01 80.0% 71.7%
3529581 103.1.1.67 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 0.57 43.0 4.46e-01 86.0% 93.3%
3610326 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.56 40.0 4.27e-01 86.0% 97.5%
3604642 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.32e-01 82.0% 93.3%
3809044 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 3.97e-01 76.0% 86.7%
3999177 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.55 41.0 3.74e-01 88.0% 92.0%
3238005 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 3.26e-01 100.0% 38.9%
3495262 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.54 42.0 2.93e-01 90.0% 86.1%
3781969 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 41.0 3.22e-01 100.0% 91.7%
3310464 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.53 37.0 3.71e-01 78.0% 78.0%
4449430 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 40.0 3.81e-01 84.0% 96.7%
4995256 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 39.0 3.73e-01 88.0% 96.9%
4980022 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.77e-01 76.0% 78.0%
3184022 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 41.0 3.29e-01 100.0% 94.6%
3170371 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 41.0 3.32e-01 100.0% 98.3%
5059852 375.1.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.51 36.0 3.83e-01 76.0% 90.0%
5000257 2002.1.1.152 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 0.50 35.0 2.05e-01 74.0% 93.9%