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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00290

Bact-Vir

PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00290

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-122
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 53.0 6.29e-01 75.0% 100.0%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.79 43.0 5.04e-01 77.8% 76.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 52.0 5.47e-01 79.2% 75.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 51.0 5.33e-01 77.8% 72.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 5.39e-01 73.6% 79.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.40e-01 77.8% 79.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.49e-01 77.8% 87.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.30e-01 80.6% 76.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.99e-01 79.2% 76.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.02e-01 88.9% 62.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.56e-01 76.4% 71.1%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 49.0 3.58e-01 77.8% 37.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.69e-01 77.8% 75.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.51e-01 100.0% 64.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.66e-01 76.4% 93.9%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 38.0 3.29e-01 76.4% 38.5%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.24e-01 81.9% 69.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.30e-01 79.2% 69.8%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.71e-01 75.0% 64.9%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 40.0 3.35e-01 72.2% 56.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 38.0 4.19e-01 72.2% 89.3%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 44.0 3.86e-01 87.5% 69.2%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 4.04e-01 73.6% 94.0%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 3.42e-01 77.8% 98.4%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 36.0 4.04e-01 70.8% 94.2%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 38.0 2.44e-01 72.2% 23.1%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.55 40.0 3.96e-01 86.1% 74.0%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 37.0 3.84e-01 70.8% 78.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.60e-01 73.6% 74.7%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.44e-01 76.4% 74.1%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.22e-01 70.8% 85.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.91e-01 76.4% 90.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 39.0 3.61e-01 80.6% 91.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.53 37.0 3.76e-01 75.0% 80.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 43.0 3.58e-01 93.1% 63.9%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 3.23e-01 77.8% 98.4%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 34.0 3.79e-01 70.8% 96.1%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.90e-01 95.8% 69.5%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 39.0 3.73e-01 86.1% 86.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.70e-01 79.2% 74.0%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 40.0 3.57e-01 93.1% 84.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.87e-01 77.8% 75.0%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.24e-01 94.4% 84.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 38.0 3.86e-01 81.9% 100.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.45e-01 77.8% 69.3%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.78 52.0 3.93e-01 76.4% 30.6%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.78 51.0 5.61e-01 76.4% 83.1%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.77 49.0 5.56e-01 77.8% 85.5%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 52.0 4.89e-01 77.8% 58.8%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 54.0 5.34e-01 77.8% 70.7%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 49.0 5.68e-01 77.8% 98.0%
4956630 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 52.0 4.02e-01 77.8% 34.8%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 50.0 5.29e-01 75.0% 80.0%
5055039 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 54.0 4.29e-01 77.8% 42.9%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 53.0 5.23e-01 76.4% 82.7%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.05e-01 76.4% 34.6%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.72 45.0 5.19e-01 81.9% 90.0%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 55.0 5.50e-01 93.1% 78.7%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 47.0 4.95e-01 73.6% 73.8%
4960540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.45e-01 76.4% 89.2%
3929809 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 41.0 5.01e-01 70.8% 100.0%
4616207 4.1.1.448 beta barrels › SH3 › SH3 › SH3 › DUF5372 0.71 46.0 5.34e-01 73.6% 96.0%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 48.0 4.41e-01 79.2% 53.7%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 56.0 4.40e-01 84.7% 88.3%
5034724 4.1.1.482 beta barrels › SH3 › SH3 › SH3 › DUF4314 0.71 48.0 5.32e-01 70.8% 94.5%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.02e-01 76.4% 78.5%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.70 51.0 4.85e-01 77.8% 71.8%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.24e-01 93.1% 86.2%
5071741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 46.0 4.96e-01 77.8% 83.3%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.69 50.0 4.78e-01 77.8% 72.9%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.69 47.0 4.92e-01 76.4% 78.5%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 50.0 4.56e-01 77.8% 64.2%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 50.0 4.57e-01 77.8% 65.3%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.98e-01 77.8% 77.1%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.68 50.0 4.93e-01 77.8% 74.7%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.68 50.0 5.06e-01 77.8% 80.0%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.66 48.0 4.59e-01 77.8% 74.1%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.66 48.0 4.47e-01 77.8% 65.6%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 48.0 4.17e-01 77.8% 55.5%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.65 48.0 4.46e-01 77.8% 63.3%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 47.0 4.42e-01 77.8% 68.9%
4966163 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.16e-01 94.4% 85.3%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.65 46.0 4.42e-01 77.8% 64.7%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 47.0 4.66e-01 77.8% 74.7%
3385654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 3.88e-01 76.4% 64.2%
3213122 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 44.0 3.90e-01 76.4% 49.5%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.41e-01 79.2% 72.0%
3277860 4.1.1.368 beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.62 44.0 4.64e-01 81.9% 84.6%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 3.92e-01 77.8% 58.2%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.56e-01 76.4% 90.9%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.67e-01 77.8% 93.8%
3166879 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 45.0 4.65e-01 77.8% 90.8%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.57e-01 77.8% 90.0%
5039702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 36.0 4.38e-01 73.6% 97.8%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.39e-01 77.8% 91.4%
5055172 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 39.0 4.27e-01 72.2% 90.9%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.57 41.0 3.55e-01 75.0% 49.1%
3636503 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 40.0 4.11e-01 77.8% 87.1%
4195627 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.56 42.0 4.40e-01 91.7% 90.8%
4206684 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.56 42.0 4.37e-01 87.5% 89.2%
3165957 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.56 40.0 4.02e-01 77.8% 82.7%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 36.0 4.12e-01 72.2% 96.0%
5023276 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 4.01e-01 81.9% 81.2%
4072405 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.55 41.0 4.12e-01 91.7% 78.7%
4068291 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 36.0 3.89e-01 70.8% 83.3%
4224041 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.54 43.0 4.27e-01 91.7% 84.0%
4186983 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.54 41.0 4.12e-01 91.7% 80.0%
4998344 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 44.0 3.61e-01 90.3% 86.6%
4355109 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 38.0 3.25e-01 76.4% 100.0%
4327595 4.1.1.402 beta barrels › SH3 › SH3 › SH3 › DUF2761 0.53 39.0 3.58e-01 79.2% 61.1%
3288795 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.53 38.0 2.56e-01 76.4% 57.2%
3579502 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.53 38.0 3.14e-01 79.2% 75.2%
4948433 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 36.0 3.75e-01 79.2% 77.9%
3260945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.90e-01 77.8% 96.7%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 40.0 2.46e-01 90.3% 39.0%