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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00333
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00333
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-121
Domain cluster:
rep: PHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00190__D4-103
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.61 | 45.0 | 5.04e-01 | 78.4% | 100.0% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 42.0 | 4.06e-01 | 78.4% | 84.8% |
| 2i79D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 41.0 | 3.67e-01 | 78.4% | 70.1% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 41.0 | 3.09e-01 | 80.2% | 41.8% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 37.0 | 3.42e-01 | 97.4% | 54.0% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.53 | 33.0 | 4.01e-01 | 76.7% | 96.0% |
| 3lm3A02 | 3.30.1120.110 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 43.0 | 4.54e-01 | 87.9% | 100.0% |
| 1nkgA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 42.0 | 3.32e-01 | 88.8% | 98.4% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 37.0 | 3.43e-01 | 98.3% | 57.9% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 37.0 | 3.73e-01 | 95.7% | 77.2% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.50 | 45.0 | 3.97e-01 | 99.1% | 68.4% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.50 | 40.0 | 4.04e-01 | 87.9% | 91.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4509973 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.68 | 46.0 | 3.01e-01 | 99.1% | 16.9% |
| 3171956 | 9.1.1.45 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C | 0.64 | 39.0 | 3.57e-01 | 99.1% | 47.3% |
| 3499681 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.63 | 39.0 | 4.32e-01 | 95.7% | 78.5% |
| 4877157 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.63 | 41.0 | 3.04e-01 | 95.7% | 24.7% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.60 | 46.0 | 4.62e-01 | 94.0% | 78.3% |
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.60 | 46.0 | 4.54e-01 | 94.0% | 75.2% |
| 4122018 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.59 | 40.0 | 4.27e-01 | 87.1% | 79.0% |
| 3953943 | 9.27.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa | 0.58 | 45.0 | 4.66e-01 | 93.1% | 86.4% |
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.57 | 41.0 | 4.32e-01 | 84.5% | 82.9% |
| 3722750 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 48.0 | 3.50e-01 | 97.4% | 84.7% |
| 863938 | 328.5.1.3 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › Tsi1 | 0.54 | 37.0 | 3.42e-01 | 97.4% | 54.0% |
| 4961667 | 5084.1.1.45 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 | 0.54 | 38.0 | 3.89e-01 | 93.1% | 74.8% |
| 1498230 | 12.1.1.117 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF3864 | 0.53 | 44.0 | 4.55e-01 | 89.7% | 99.1% |
| 3541029 | 12.3.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 | 0.53 | 42.0 | 3.10e-01 | 86.2% | 96.1% |
| 3263006 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.53 | 44.0 | 3.99e-01 | 94.8% | 65.6% |
| 3859372 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.53 | 36.0 | 3.75e-01 | 92.2% | 77.1% |
| 3240866 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.53 | 39.0 | 4.18e-01 | 86.2% | 91.0% |
| 4569091 | 11.1.1.88 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM9_1 | 0.53 | 40.0 | 3.57e-01 | 100.0% | 54.9% |
| 3870987 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.52 | 35.0 | 3.77e-01 | 91.4% | 83.2% |
| 5072494 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.52 | 40.0 | 3.56e-01 | 99.1% | 55.1% |
| 3207771 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.51 | 46.0 | 3.89e-01 | 99.1% | 69.4% |
| 3739298 | 59.1.3.1 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 | 0.51 | 30.0 | 3.12e-01 | 89.7% | 60.0% |
| 3908192 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.51 | 35.0 | 3.78e-01 | 92.2% | 84.0% |
| 5068097 | 2484.1.1.71 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter | 0.50 | 42.0 | 2.84e-01 | 89.7% | 85.8% |