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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00012

Bact-Vir

PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00012

Identity

Kingdom:
phage

Quality

83.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-127
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.77 59.0 6.47e-01 81.4% 97.5%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 64.0 5.09e-01 100.0% 59.3%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.69 55.0 5.52e-01 100.0% 84.0%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 64.0 5.27e-01 100.0% 60.4%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.69 60.0 5.74e-01 100.0% 83.6%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 60.0 5.14e-01 100.0% 66.2%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.66 61.0 5.95e-01 100.0% 90.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 58.0 4.98e-01 100.0% 65.6%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 58.0 4.79e-01 100.0% 63.6%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.64 57.0 5.43e-01 100.0% 95.7%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 50.0 5.22e-01 100.0% 94.3%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 56.0 4.75e-01 100.0% 67.1%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.62 49.0 4.40e-01 84.5% 72.2%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.62 54.0 4.63e-01 100.0% 96.3%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 55.0 4.56e-01 100.0% 61.6%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.87e-01 100.0% 91.2%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.60 42.0 3.05e-01 71.1% 44.3%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.86e-01 100.0% 94.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.60e-01 100.0% 69.8%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.57e-01 100.0% 66.7%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 4.67e-01 100.0% 72.7%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.52e-01 100.0% 67.3%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.59e-01 100.0% 70.9%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.53e-01 100.0% 68.9%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.40e-01 100.0% 59.8%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.52e-01 100.0% 71.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.59 40.0 3.14e-01 71.1% 52.4%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.40e-01 100.0% 64.8%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.52e-01 100.0% 72.0%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 36.0 3.96e-01 81.4% 81.3%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 4.40e-01 97.9% 72.2%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 30.0 3.84e-01 72.2% 92.5%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 50.0 4.25e-01 100.0% 75.6%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 49.0 4.10e-01 100.0% 72.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.35e-01 88.7% 56.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 49.0 4.29e-01 100.0% 80.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 29.0 3.65e-01 71.1% 89.1%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.54 44.0 4.04e-01 90.7% 88.5%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 49.0 3.94e-01 100.0% 79.8%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 4.19e-01 100.0% 83.0%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 3.04e-01 88.7% 54.0%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 47.0 3.71e-01 100.0% 48.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.53e-01 100.0% 98.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.96e-01 100.0% 76.4%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 36.0 3.39e-01 97.9% 58.3%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 46.0 4.10e-01 100.0% 99.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.52 32.0 3.72e-01 99.0% 88.1%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 4.06e-01 99.0% 78.0%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 4.04e-01 99.0% 76.2%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 32.0 3.65e-01 79.4% 84.5%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.81e-01 100.0% 70.9%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.44e-01 77.3% 86.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.94e-01 99.0% 95.7%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.94e-01 100.0% 76.6%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 35.0 2.63e-01 72.2% 79.5%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.80e-01 96.9% 76.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 36.0 3.88e-01 95.9% 91.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032759 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.72 52.0 5.57e-01 100.0% 86.9%
1292982 9.1.1.5 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Triabin 0.69 63.0 5.15e-01 100.0% 56.3%
3745663 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.68 60.0 5.02e-01 100.0% 60.7%
3599709 9.5.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B 0.67 59.0 4.93e-01 100.0% 97.1%
3396360 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 60.0 5.44e-01 100.0% 90.0%
3606639 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.65 57.0 4.68e-01 100.0% 88.6%
3740570 2.1.1.120 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C 0.65 38.0 3.84e-01 84.5% 57.9%
3883246 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.64 58.0 4.80e-01 100.0% 64.7%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.64 30.0 3.79e-01 100.0% 76.4%
3851797 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 56.0 4.73e-01 100.0% 63.6%
5063311 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.63 31.0 4.28e-01 71.1% 100.0%
875 9.13.1.3 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.62 49.0 4.40e-01 84.5% 72.2%
3868838 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 54.0 4.62e-01 100.0% 65.6%
3510681 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.83e-01 100.0% 94.7%
3763572 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 54.0 4.67e-01 100.0% 64.5%
3780792 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 53.0 5.09e-01 100.0% 89.6%
3776069 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 54.0 4.60e-01 100.0% 64.4%
185765 5084.5.1.13 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 0.60 42.0 3.05e-01 71.1% 44.3%
3279724 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 54.0 4.91e-01 100.0% 87.7%
3415072 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 54.0 4.80e-01 100.0% 89.3%
3747656 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 53.0 4.63e-01 100.0% 70.0%
4380184 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.60 48.0 5.03e-01 100.0% 97.8%
1684916 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 52.0 4.57e-01 100.0% 66.7%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 53.0 4.89e-01 100.0% 93.6%
3033584 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 52.0 4.38e-01 100.0% 64.1%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 52.0 4.61e-01 100.0% 84.8%
5022112 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.59 51.0 4.19e-01 100.0% 88.4%
4680442 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 51.0 4.39e-01 100.0% 63.6%
3854099 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 51.0 4.43e-01 100.0% 65.8%
3990703 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 52.0 4.38e-01 100.0% 66.1%
3175088 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.58 52.0 4.38e-01 100.0% 73.9%
4062537 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 50.0 4.39e-01 100.0% 66.5%
4559690 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 51.0 4.38e-01 100.0% 65.6%
4929661 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 51.0 4.37e-01 100.0% 76.2%
3853571 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.58 43.0 4.36e-01 79.4% 89.5%
142587 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 49.0 4.48e-01 97.9% 76.5%
4927832 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 51.0 4.91e-01 100.0% 91.8%
143050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 50.0 4.32e-01 100.0% 79.5%
3289957 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 50.0 4.44e-01 100.0% 76.4%
3283627 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.56 50.0 4.34e-01 100.0% 79.3%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.56 48.0 4.07e-01 100.0% 75.4%
3278805 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 49.0 4.35e-01 100.0% 81.4%
1715837 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 49.0 4.28e-01 100.0% 80.7%
3283241 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 49.0 4.27e-01 100.0% 83.3%
3445792 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 41.0 2.81e-01 80.4% 35.3%
3727703 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 49.0 4.09e-01 100.0% 72.9%
4021604 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.55 44.0 4.08e-01 87.6% 79.2%
3740888 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 48.0 4.14e-01 100.0% 73.8%
3371001 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.55 49.0 4.31e-01 100.0% 84.1%
3960559 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 47.0 4.39e-01 97.9% 94.3%
5038503 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 47.0 4.30e-01 100.0% 81.5%
5068015 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 31.0 3.44e-01 88.7% 70.7%
3959660 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 47.0 4.21e-01 100.0% 81.8%
3288437 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 47.0 4.13e-01 100.0% 81.3%
4178260 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 37.0 3.91e-01 72.2% 95.3%
4228012 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 46.0 4.06e-01 100.0% 79.1%
3942181 6150.1.1.0 a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.53 46.0 4.58e-01 100.0% 99.0%
3827531 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.53 40.0 3.02e-01 83.5% 95.8%
3953847 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 45.0 3.93e-01 99.0% 74.8%
3960667 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 45.0 4.15e-01 100.0% 88.1%
3832653 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.52 47.0 4.04e-01 100.0% 72.9%
4964699 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 35.0 3.47e-01 70.1% 78.0%