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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00028
Bact-VirPHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00028
Identity
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-89
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wd5A02 | 3.30.1310.20 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › PRTase-like | 0.70 | 42.0 | 4.82e-01 | 73.3% | 83.6% |
| 2bhvB01 | 2.40.128.260 | Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI | 0.64 | 46.0 | 3.76e-01 | 75.6% | 48.4% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 35.0 | 3.01e-01 | 72.1% | 34.8% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.64 | 46.0 | 3.89e-01 | 90.7% | 43.5% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 54.0 | 4.78e-01 | 100.0% | 84.2% |
| 3fynA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 52.0 | 4.33e-01 | 96.5% | 74.3% |
| 5fbhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 3.47e-01 | 79.1% | 43.3% |
| 1ckmA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.57 | 40.0 | 3.32e-01 | 73.3% | 87.7% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 43.0 | 2.89e-01 | 82.6% | 30.9% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 48.0 | 4.56e-01 | 98.8% | 99.0% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.55 | 29.0 | 3.32e-01 | 83.7% | 71.4% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.55 | 45.0 | 4.05e-01 | 94.2% | 63.3% |
| 1v5mA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 4.04e-01 | 100.0% | 86.0% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.53 | 38.0 | 3.95e-01 | 94.2% | 82.1% |
| 7x36A01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 45.0 | 3.13e-01 | 98.8% | 94.8% |
| 1n7vA02 | 2.60.330.10 | Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 | 0.52 | 38.0 | 3.43e-01 | 77.9% | 100.0% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.32e-01 | 87.2% | 44.9% |
| 1floC02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.51 | 41.0 | 3.02e-01 | 90.7% | 80.2% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 38.0 | 3.71e-01 | 82.6% | 100.0% |
| 1pguA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 45.0 | 3.05e-01 | 100.0% | 31.5% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 43.0 | 3.80e-01 | 100.0% | 76.9% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 35.0 | 3.39e-01 | 75.6% | 63.0% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 34.0 | 3.59e-01 | 73.3% | 80.0% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 36.0 | 3.41e-01 | 94.2% | 62.3% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.53e-01 | 77.9% | 73.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396442 | 2007.1.2.30 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › IR75A_N | 0.63 | 46.0 | 3.57e-01 | 76.7% | 60.0% |
| 3466584 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 36.0 | 3.99e-01 | 72.1% | 73.8% |
| 3498392 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 54.0 | 4.91e-01 | 100.0% | 95.8% |
| 3517799 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.61 | 48.0 | 3.59e-01 | 83.7% | 58.1% |
| 3232466 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.61 | 46.0 | 3.22e-01 | 80.2% | 92.3% |
| 4311607 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.59 | 50.0 | 4.26e-01 | 94.2% | 72.1% |
| 5077254 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.57 | 44.0 | 2.76e-01 | 82.6% | 41.0% |
| 4641929 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.57 | 48.0 | 4.30e-01 | 94.2% | 76.0% |
| 3923785 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.55 | 48.0 | 4.08e-01 | 98.8% | 87.3% |
| 3315173 | 243.3.1.46 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM | 0.54 | 41.0 | 3.82e-01 | 91.9% | 62.6% |
| 3911252 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 47.0 | 4.62e-01 | 100.0% | 95.8% |
| 3940986 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 39.0 | 4.19e-01 | 79.1% | 92.0% |
| 3492911 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 39.0 | 3.09e-01 | 77.9% | 55.0% |
| 4130753 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.53 | 41.0 | 2.76e-01 | 94.2% | 20.6% |
| 4254177 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.53 | 43.0 | 3.06e-01 | 91.9% | 94.6% |
| 3570145 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.53 | 46.0 | 3.73e-01 | 96.5% | 78.2% |
| 3576534 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.53 | 44.0 | 3.52e-01 | 93.0% | 88.9% |
| 3273166 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.17e-01 | 100.0% | 31.6% |
| 4393621 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 44.0 | 3.14e-01 | 95.3% | 63.7% |
| 3593907 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 47.0 | 3.24e-01 | 100.0% | 34.8% |
| 3581484 | 3767.1.1.2 ↗ | a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform | 0.52 | 42.0 | 3.27e-01 | 87.2% | 94.1% |
| 3586655 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 45.0 | 3.51e-01 | 97.7% | 85.3% |
| 4960621 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 45.0 | 2.80e-01 | 96.5% | 44.0% |
| 3208490 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 45.0 | 2.91e-01 | 100.0% | 51.7% |
| 3314075 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.50 | 36.0 | 3.40e-01 | 75.6% | 66.7% |