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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00068
Bact-VirPHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57_111-130
Domain cluster:
rep: SRR1747065_scaffold_0_prodigal-single.1__X__X__00418__D1-60_139-152
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 43.0 | 5.48e-01 | 84.4% | 100.0% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 42.0 | 5.36e-01 | 84.4% | 100.0% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 43.0 | 4.69e-01 | 100.0% | 73.4% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 40.0 | 4.50e-01 | 84.4% | 73.8% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 42.0 | 4.83e-01 | 100.0% | 82.8% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 42.0 | 5.19e-01 | 84.4% | 98.0% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 41.0 | 3.58e-01 | 100.0% | 42.3% |
| 3d31A03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.68 | 42.0 | 4.41e-01 | 96.1% | 69.0% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 42.0 | 3.72e-01 | 100.0% | 45.0% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 44.0 | 4.72e-01 | 100.0% | 82.1% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.60 | 36.0 | 3.91e-01 | 98.7% | 72.3% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 47.0 | 3.92e-01 | 89.6% | 51.6% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 45.0 | 3.80e-01 | 89.6% | 50.4% |
| 1xjvA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 51.0 | 4.04e-01 | 97.4% | 69.1% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 45.0 | 3.96e-01 | 84.4% | 89.2% |
| 4l5tB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 45.0 | 4.22e-01 | 97.4% | 70.3% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 47.0 | 4.14e-01 | 97.4% | 63.3% |
| 4hikA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 50.0 | 4.06e-01 | 97.4% | 65.9% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 37.0 | 4.05e-01 | 89.6% | 86.9% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 44.0 | 3.91e-01 | 84.4% | 86.8% |
| 6lbtA01 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 47.0 | 3.81e-01 | 93.5% | 64.8% |
| 5ylyA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 43.0 | 3.79e-01 | 84.4% | 89.3% |
| 6nrzA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 47.0 | 3.63e-01 | 90.9% | 53.5% |
| 1bbuA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.65e-01 | 88.3% | 54.3% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 46.0 | 4.15e-01 | 90.9% | 88.2% |
| 3a35A01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 43.0 | 4.03e-01 | 84.4% | 83.7% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 43.0 | 3.87e-01 | 84.4% | 78.2% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 43.0 | 4.06e-01 | 84.4% | 87.6% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 42.0 | 4.05e-01 | 84.4% | 87.6% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 46.0 | 3.71e-01 | 92.2% | 53.9% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.53 | 47.0 | 3.93e-01 | 100.0% | 91.0% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 47.0 | 3.47e-01 | 100.0% | 54.3% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 40.0 | 3.82e-01 | 84.4% | 85.9% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 45.0 | 3.62e-01 | 97.4% | 51.8% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 42.0 | 4.20e-01 | 94.8% | 86.4% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1509336 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.72 | 43.0 | 4.47e-01 | 84.4% | 64.4% |
| 4930329 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 42.0 | 5.10e-01 | 84.4% | 94.0% |
| 5015458 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.69 | 43.0 | 4.28e-01 | 100.0% | 61.3% |
| 4051997 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.68 | 44.0 | 3.72e-01 | 100.0% | 42.5% |
| 4190716 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.68 | 45.0 | 3.85e-01 | 100.0% | 45.2% |
| 5010824 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.68 | 44.0 | 3.78e-01 | 100.0% | 45.1% |
| 3588949 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.68 | 44.0 | 3.57e-01 | 100.0% | 38.1% |
| 4031803 | 2.4.1.10 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE,OB_MalK | 0.68 | 44.0 | 3.60e-01 | 100.0% | 39.2% |
| 3281562 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.68 | 44.0 | 3.60e-01 | 100.0% | 39.2% |
| 4961575 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 44.0 | 3.64e-01 | 100.0% | 40.8% |
| 3944153 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 42.0 | 3.68e-01 | 100.0% | 44.5% |
| 4260969 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 47.0 | 3.85e-01 | 100.0% | 41.5% |
| 4994830 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 44.0 | 3.81e-01 | 100.0% | 45.2% |
| 3947186 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 44.0 | 3.73e-01 | 100.0% | 43.3% |
| 4994673 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.67 | 43.0 | 3.52e-01 | 100.0% | 37.8% |
| 4047281 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 44.0 | 3.90e-01 | 100.0% | 49.5% |
| 3969569 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.66 | 44.0 | 4.93e-01 | 96.1% | 88.3% |
| 4478612 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.66 | 43.0 | 3.62e-01 | 100.0% | 42.5% |
| 4311788 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.66 | 46.0 | 3.93e-01 | 100.0% | 47.8% |
| 3965386 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.66 | 45.0 | 3.83e-01 | 100.0% | 45.8% |
| 1075289 | 2.4.1.5 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal | 0.66 | 43.0 | 4.65e-01 | 100.0% | 79.7% |
| 4443040 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.65 | 44.0 | 3.97e-01 | 100.0% | 51.9% |
| 4076380 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 49.0 | 5.48e-01 | 96.1% | 100.0% |
| 4197641 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 42.0 | 3.70e-01 | 100.0% | 47.3% |
| 4165306 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.64 | 46.0 | 4.08e-01 | 100.0% | 54.3% |
| 4085451 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 45.0 | 3.94e-01 | 100.0% | 50.9% |
| 4961931 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.62 | 48.0 | 3.86e-01 | 100.0% | 44.3% |
| 3739833 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 4.45e-01 | 97.4% | 61.8% |
| 3387114 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.61 | 42.0 | 3.91e-01 | 100.0% | 57.9% |
| 3591052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 45.0 | 4.93e-01 | 100.0% | 93.8% |
| 4481633 | 2.4.1.11 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 | 0.59 | 43.0 | 3.61e-01 | 100.0% | 46.4% |
| 3284078 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.59 | 45.0 | 3.69e-01 | 100.0% | 45.9% |
| 4488657 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 47.0 | 3.92e-01 | 100.0% | 50.8% |
| 4187609 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.58 | 47.0 | 4.38e-01 | 100.0% | 70.5% |
| 3698054 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.57 | 49.0 | 3.75e-01 | 93.5% | 66.9% |
| 4547794 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.57 | 46.0 | 3.87e-01 | 100.0% | 52.3% |
| 2319280 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.56 | 50.0 | 4.06e-01 | 97.4% | 64.5% |
| 4159763 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 46.0 | 3.78e-01 | 88.3% | 77.8% |
| 4068524 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.55 | 46.0 | 3.78e-01 | 100.0% | 51.9% |
| 3676133 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 48.0 | 3.82e-01 | 97.4% | 67.7% |
| 4286148 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.54 | 45.0 | 3.55e-01 | 88.3% | 57.3% |
| 3172150 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.54 | 50.0 | 3.66e-01 | 100.0% | 55.4% |
| 3598121 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 3.78e-01 | 92.2% | 77.9% |
| 4025310 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.54 | 46.0 | 3.78e-01 | 90.9% | 56.9% |
| 3856954 | 375.1.1.308 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4502 | 0.53 | 45.0 | 4.19e-01 | 90.9% | 91.6% |
| 3544107 | 2.1.1.288 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4502 | 0.53 | 45.0 | 4.19e-01 | 90.9% | 91.6% |
| 3164576 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.53 | 42.0 | 3.73e-01 | 84.4% | 72.5% |
| 3485638 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 47.0 | 3.86e-01 | 100.0% | 60.0% |
| 4208850 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.52 | 42.0 | 3.95e-01 | 84.4% | 86.7% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 44.0 | 3.86e-01 | 89.6% | 75.5% |
| 3654028 | 2.1.1.241 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rsm22 | 0.51 | 40.0 | 4.40e-01 | 83.1% | 100.0% |
| 3373621 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 47.0 | 4.67e-01 | 100.0% | 96.2% |
| 4965843 | 2.4.1.19 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › DUF7861 | 0.51 | 46.0 | 4.27e-01 | 100.0% | 79.8% |
| 3409459 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.51 | 46.0 | 4.05e-01 | 98.7% | 90.0% |
| 3830803 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 46.0 | 4.10e-01 | 97.4% | 81.9% |
| 4558677 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.50 | 44.0 | 3.46e-01 | 100.0% | 47.1% |
| 3179184 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 44.0 | 4.17e-01 | 96.1% | 85.6% |
D2
medium
residues 58-110
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.52 | 43.0 | 2.85e-01 | 100.0% | 41.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.58 | 37.0 | 3.74e-01 | 96.2% | 63.0% |
| 3676121 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.57 | 40.0 | 2.75e-01 | 77.4% | 85.1% |
| 4103593 | 7581.1.1.23 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ACP_syn_III | 0.57 | 45.0 | 3.18e-01 | 90.6% | 80.5% |
| 4266767 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.52 | 34.0 | 3.19e-01 | 100.0% | 50.0% |