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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00182
Bact-VirPHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
45.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 718-777_790-809
D2
medium
residues 276-336
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c83A02 | 3.40.50.11110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, C-terminal GT-B Rossman nucleotide-binding domain | 0.56 | 43.0 | 3.24e-01 | 90.2% | 35.8% |
| 1ivnA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 46.0 | 3.44e-01 | 98.4% | 40.4% |
| 1xrsB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.51 | 39.0 | 3.04e-01 | 90.2% | 38.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3722489 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.53 | 41.0 | 2.97e-01 | 93.4% | 69.6% |
| 3826203 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.52 | 42.0 | 2.81e-01 | 98.4% | 38.7% |
D3
medium
residues 337-449
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14262.13 best | Cthe_2159 | 25.8 | 8.20e-06 | 97.4% | 32.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kh3A00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.77 | 59.0 | 3.81e-01 | 94.7% | 18.7% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.74 | 67.0 | 4.89e-01 | 96.5% | 57.2% |
| 3bh7B01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.73 | 55.0 | 4.53e-01 | 93.8% | 45.6% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 65.0 | 4.73e-01 | 96.5% | 55.9% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.72 | 63.0 | 3.98e-01 | 94.7% | 26.8% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.71 | 56.0 | 4.96e-01 | 93.8% | 59.5% |
| 4hwvB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 64.0 | 4.16e-01 | 100.0% | 47.6% |
| 4oj5C04 | 2.160.20.130 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 61.0 | 5.12e-01 | 94.7% | 58.4% |
| 1k5cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 58.0 | 4.17e-01 | 96.5% | 46.2% |
| 1igrA01 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.64 | 55.0 | 4.69e-01 | 94.7% | 64.1% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 49.0 | 5.02e-01 | 90.3% | 94.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980411 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.74 | 65.0 | 4.70e-01 | 94.7% | 36.0% |
| 3965473 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.72 | 64.0 | 5.02e-01 | 96.5% | 60.4% |
| 4021166 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.72 | 65.0 | 4.58e-01 | 97.3% | 35.1% |
| 4398996 | 207.6.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind | 0.71 | 50.0 | 4.64e-01 | 94.7% | 58.6% |
| 4981827 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 63.0 | 5.07e-01 | 96.5% | 61.9% |
| 158287 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.70 | 56.0 | 4.88e-01 | 93.8% | 57.3% |
| 5034576 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.70 | 62.0 | 4.75e-01 | 96.5% | 61.2% |
| 2516583 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.67 | 51.0 | 5.68e-01 | 93.8% | 100.0% |
| 4028145 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.66 | 59.0 | 5.29e-01 | 96.5% | 70.8% |
| 3187916 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.65 | 51.0 | 4.13e-01 | 94.7% | 43.6% |
| 4937812 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.62 | 55.0 | 3.86e-01 | 97.3% | 52.1% |
| 4023937 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.62 | 55.0 | 5.23e-01 | 96.5% | 84.4% |
| 3844962 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.62 | 52.0 | 5.18e-01 | 94.7% | 86.7% |
| 4029787 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.62 | 55.0 | 4.33e-01 | 96.5% | 54.8% |
| 3708794 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.61 | 54.0 | 4.72e-01 | 97.3% | 70.4% |
| 4963654 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.60 | 54.0 | 3.73e-01 | 100.0% | 68.6% |
| 3634222 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.60 | 53.0 | 4.76e-01 | 97.3% | 72.5% |
| 3629898 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.60 | 38.0 | 4.50e-01 | 71.7% | 97.3% |
| 3427943 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.54 | 48.0 | 3.81e-01 | 97.3% | 53.0% |
D4
medium
residues 450-558
D5
medium
residues 559-674
D6
medium
residues 862-878_890-975