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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00223
Bact-VirPHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00223
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-178
Domain cluster:
rep: PHAGE-A10--js4906-27-5_S32_scaffold_40_curated_closed_complete_prodigal-single.1__X__X__00127__D23-179
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.76 | 34.0 | 4.60e-01 | 90.3% | 80.2% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.64 | 34.0 | 4.42e-01 | 78.2% | 92.2% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.51 | 40.0 | 3.79e-01 | 83.0% | 78.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4494820 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.72 | 59.0 | 6.22e-01 | 96.4% | 96.0% |
| 3285492 | 507.1.1.2 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind | 0.67 | 58.0 | 5.84e-01 | 98.8% | 93.3% |
| 3504474 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.64 | 39.0 | 4.81e-01 | 92.1% | 100.0% |
| 3944931 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 32.0 | 4.10e-01 | 87.3% | 96.7% |
| 4376809 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.58 | 46.0 | 4.95e-01 | 95.8% | 99.3% |
| 3684729 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 31.0 | 3.17e-01 | 99.4% | 53.3% |
| 4512680 | 5001.1.1.9 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R | 0.51 | 43.0 | 3.64e-01 | 92.7% | 59.6% |
| 4284000 | 3567.1.1.170 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF27758 | 0.51 | 40.0 | 3.79e-01 | 85.5% | 94.1% |
| 3433598 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.50 | 40.0 | 4.27e-01 | 91.5% | 98.6% |
D2
medium
residues 206-221_407-517
Domain cluster:
rep: term2_saliva_scaffold_0_prodigal-single.1__X__X__00082__D408-506
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.49e-01 | 89.0% | 94.1% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 31.0 | 3.12e-01 | 74.0% | 56.5% |
| 2rhqB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 44.0 | 3.83e-01 | 96.1% | 76.0% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 44.0 | 3.20e-01 | 92.9% | 91.8% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.50 | 33.0 | 3.55e-01 | 93.7% | 76.9% |
| 3qt2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 30.0 | 3.21e-01 | 86.6% | 65.5% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.47e-01 | 86.6% | 55.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3550635 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.64 | 31.0 | 4.00e-01 | 80.3% | 81.4% |
| 4948943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 35.0 | 4.34e-01 | 89.0% | 88.5% |
| 3612373 | 109.4.1.438 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CHAT | 0.62 | 43.0 | 3.61e-01 | 70.9% | 63.6% |
| 4419134 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.58 | 45.0 | 3.45e-01 | 81.9% | 80.7% |
| 4940924 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 33.0 | 3.89e-01 | 87.4% | 82.4% |
| 3404065 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.56 | 28.0 | 3.41e-01 | 80.3% | 73.8% |
| 3597976 | 2484.8.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) | 0.56 | 41.0 | 3.46e-01 | 76.4% | 62.8% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 31.0 | 3.77e-01 | 90.6% | 87.5% |
| 3192396 | 243.5.1.2 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 | 0.54 | 38.0 | 3.91e-01 | 98.4% | 75.8% |
| 3651043 | 243.3.1.47 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 | 0.53 | 32.0 | 3.59e-01 | 93.7% | 77.9% |
| 4077515 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.53 | 40.0 | 2.97e-01 | 81.1% | 91.9% |
| 4997180 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 40.0 | 4.00e-01 | 79.5% | 94.6% |
| 3412626 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.53 | 39.0 | 2.66e-01 | 77.2% | 61.1% |
| 3788029 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.51 | 36.0 | 2.94e-01 | 72.4% | 49.2% |
| 3481564 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 29.0 | 3.58e-01 | 85.0% | 88.7% |
| 4054284 | 220.1.1.115 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 | 0.51 | 34.0 | 3.99e-01 | 92.9% | 98.9% |
| 4979129 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.50 | 30.0 | 2.88e-01 | 88.2% | 48.3% |
| 2887749 | 2484.1.1.219 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 | 0.50 | 36.0 | 3.01e-01 | 75.6% | 86.4% |
D3
medium
residues 222-406
Domain cluster:
rep: NC_047796.1__YP_009788369.1__HOR47_gp057__00057__D561-602_618-705
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20307.5 best | divDNAB | 37.5 | 1.60e-09 | 100.0% | 51.1% |
| PF03796.22 | DnaB_C | 46.7 | 3.90e-12 | 98.4% | 58.8% |
| PF13481.13 | AAA_25 | 27.2 | 3.80e-06 | 97.3% | 79.5% |