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PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00240
Bact-VirPHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
52.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 88-167
D2
medium
residues 1-82
Domain cluster:
rep: SRR1747065_scaffold_10_prodigal-single.1__X__X__00104__D12-75
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 46.0 | 3.60e-01 | 76.8% | 64.6% |
| 2cs0A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 44.0 | 4.23e-01 | 75.6% | 70.5% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 49.0 | 3.66e-01 | 85.4% | 60.6% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 49.0 | 3.67e-01 | 86.6% | 91.0% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 47.0 | 3.54e-01 | 85.4% | 58.8% |
| 1h9oA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 46.0 | 4.17e-01 | 81.7% | 63.0% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 43.0 | 3.85e-01 | 78.0% | 90.8% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 44.0 | 3.31e-01 | 84.1% | 83.5% |
| 5anpA00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.58 | 43.0 | 3.63e-01 | 80.5% | 62.8% |
| 1f89A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.56 | 45.0 | 3.20e-01 | 89.0% | 63.8% |
| 4ms4B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.46e-01 | 84.1% | 80.6% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 44.0 | 3.12e-01 | 87.8% | 80.4% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 34.0 | 3.58e-01 | 80.5% | 68.5% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 39.0 | 2.59e-01 | 73.2% | 39.9% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.55 | 43.0 | 3.46e-01 | 84.1% | 100.0% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 43.0 | 3.40e-01 | 85.4% | 82.5% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 41.0 | 3.57e-01 | 84.1% | 98.5% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.21e-01 | 78.0% | 54.9% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 2.71e-01 | 72.0% | 99.6% |
| 1lwuC01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.53 | 37.0 | 3.11e-01 | 74.4% | 55.0% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.84e-01 | 73.2% | 77.6% |
| 3q9oA03 | 3.90.175.10 | Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 | 0.52 | 38.0 | 2.94e-01 | 80.5% | 91.9% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 33.0 | 3.48e-01 | 70.7% | 74.0% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 39.0 | 2.78e-01 | 85.4% | 81.8% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.78e-01 | 91.5% | 80.5% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.50 | 42.0 | 2.57e-01 | 92.7% | 15.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514344 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.65 | 49.0 | 4.40e-01 | 80.5% | 60.9% |
| 3798324 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.63 | 49.0 | 4.09e-01 | 84.1% | 51.4% |
| 3995595 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 48.0 | 4.04e-01 | 81.7% | 50.4% |
| 158839 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 49.0 | 4.27e-01 | 85.4% | 60.3% |
| 3391363 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.62 | 47.0 | 3.70e-01 | 81.7% | 91.7% |
| 3954395 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.62 | 40.0 | 4.66e-01 | 84.1% | 100.0% |
| 5049198 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.61 | 47.0 | 3.76e-01 | 81.7% | 89.6% |
| 4237407 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.61 | 44.0 | 3.13e-01 | 78.0% | 73.8% |
| 3274180 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 45.0 | 4.10e-01 | 80.5% | 67.3% |
| 3916025 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 50.0 | 4.25e-01 | 96.3% | 60.7% |
| 3282814 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.59 | 40.0 | 4.10e-01 | 86.6% | 71.2% |
| 3225190 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.59 | 45.0 | 3.57e-01 | 81.7% | 93.7% |
| 3875076 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 48.0 | 3.95e-01 | 89.0% | 55.9% |
| 3624651 | 7528.1.1.5 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II | 0.58 | 42.0 | 3.71e-01 | 76.8% | 62.5% |
| 3535755 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 47.0 | 3.98e-01 | 89.0% | 57.9% |
| 3187473 | 7579.1.1.101 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE | 0.57 | 42.0 | 2.90e-01 | 81.7% | 75.2% |
| 4027162 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.55 | 38.0 | 2.44e-01 | 70.7% | 95.9% |
| 3928377 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 42.0 | 3.32e-01 | 84.1% | 85.2% |
| 4282052 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.55 | 42.0 | 2.98e-01 | 85.4% | 63.2% |
| 1137984 | 7528.1.1.5 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II | 0.54 | 40.0 | 3.53e-01 | 79.3% | 77.9% |
| 3188735 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 37.0 | 3.37e-01 | 74.4% | 73.0% |
| 3654241 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 43.0 | 2.68e-01 | 96.3% | 41.4% |
| 3519934 | 5.1.4.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 | 0.52 | 36.0 | 2.68e-01 | 73.2% | 51.3% |
| 3396976 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.52 | 38.0 | 2.45e-01 | 76.8% | 58.1% |
| 4028413 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 41.0 | 2.76e-01 | 90.2% | 83.8% |
| 3456638 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 40.0 | 2.67e-01 | 85.4% | 53.2% |
| 3204533 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 34.0 | 3.55e-01 | 70.7% | 76.0% |
| 1487323 | 79.1.1.4 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail | 0.51 | 42.0 | 3.75e-01 | 92.7% | 68.3% |
| 3803383 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.51 | 40.0 | 2.78e-01 | 91.5% | 72.5% |