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PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00043

Bact-Vir

PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00043

Identity

Kingdom:
phage

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-64
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 58.0 5.12e-01 85.4% 58.3%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 6.01e-01 100.0% 95.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 58.0 5.81e-01 97.9% 88.0%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.70 61.0 4.08e-01 100.0% 47.9%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.70e-01 91.7% 55.4%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.03e-01 100.0% 63.0%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 58.0 5.22e-01 100.0% 80.3%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 57.0 5.08e-01 100.0% 83.3%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.67 56.0 4.85e-01 100.0% 72.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.66 55.0 4.49e-01 100.0% 66.7%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 49.0 3.90e-01 83.3% 43.6%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 53.0 4.74e-01 100.0% 64.0%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 50.0 3.55e-01 95.8% 81.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.28e-01 100.0% 51.1%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 56.0 3.81e-01 100.0% 67.1%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.61 49.0 4.03e-01 89.6% 77.3%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 49.0 4.46e-01 100.0% 79.7%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.24e-01 97.9% 55.4%
3a2pA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.60 47.0 2.75e-01 91.7% 21.3%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.59 51.0 3.70e-01 100.0% 83.5%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.26e-01 100.0% 84.0%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.58 47.0 4.13e-01 100.0% 60.5%
1u60A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 46.0 2.93e-01 97.9% 41.7%
1wviA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 48.0 3.49e-01 100.0% 69.7%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.14e-01 97.9% 82.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 4.18e-01 100.0% 88.3%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 3.69e-01 100.0% 85.1%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 48.0 4.38e-01 100.0% 95.5%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 41.0 3.73e-01 95.8% 76.7%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590733 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.86 66.0 6.56e-01 91.7% 80.0%
3590835 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.85 67.0 6.86e-01 91.7% 91.1%
2393452 101.43.1.1 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.81 69.0 6.56e-01 97.9% 80.4%
4997429 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 55.0 5.45e-01 77.1% 70.0%
3980764 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.59e-01 97.9% 97.8%
4979322 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 69.0 6.09e-01 100.0% 67.1%
4978898 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.54e-01 95.8% 97.8%
2627770 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.79 62.0 5.54e-01 87.5% 63.2%
3506369 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.78 67.0 4.08e-01 100.0% 15.4%
3730184 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.78 69.0 6.60e-01 100.0% 90.9%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.78 68.0 6.72e-01 97.9% 94.0%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.78 67.0 6.27e-01 100.0% 78.3%
3958338 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.78 63.0 6.50e-01 97.9% 97.8%
3730451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 65.0 5.48e-01 100.0% 56.2%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.35e-01 97.9% 90.9%
3953987 101.1.2.213 ↗ alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.77 56.0 4.69e-01 83.3% 46.3%
5049118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 6.18e-01 100.0% 75.4%
3203068 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.77 66.0 6.42e-01 100.0% 87.3%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.44e-01 97.9% 89.1%
3589159 101.1.2.488 ↗ alpha arrays › HTH › HTH › winged helix domain › DDE_Tnp_IS66 0.77 66.0 5.79e-01 100.0% 65.3%
3629477 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.26e-01 97.9% 80.0%
3960420 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 68.0 4.99e-01 100.0% 88.0%
3575777 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.77 67.0 6.68e-01 97.9% 98.0%
4952724 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 65.0 4.86e-01 100.0% 37.6%
3692546 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.77 64.0 6.41e-01 100.0% 92.0%
3793542 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.17e-01 97.9% 81.7%
3574709 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 6.20e-01 97.9% 83.3%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 6.07e-01 100.0% 73.8%
4953748 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 5.65e-01 100.0% 62.7%
3958041 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 5.71e-01 100.0% 69.2%
4016548 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.76 64.0 6.24e-01 100.0% 90.9%
3584413 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 6.07e-01 100.0% 78.5%
3957316 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.76 62.0 5.68e-01 97.9% 69.2%
3962597 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.76 62.0 5.68e-01 97.9% 69.2%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 64.0 6.02e-01 97.9% 83.3%
4019525 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.76 65.0 6.12e-01 100.0% 86.7%
4958195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.20e-01 100.0% 87.3%
4927588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 66.0 5.72e-01 100.0% 64.0%
3621273 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.76 65.0 6.22e-01 95.8% 89.1%
3723123 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 64.0 6.06e-01 100.0% 80.0%
5047162 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.72e-01 97.9% 70.8%
3960847 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.75 63.0 4.69e-01 100.0% 36.2%
4019326 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.75 61.0 5.90e-01 100.0% 81.8%
3724068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 6.09e-01 100.0% 90.9%
3901968 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 5.97e-01 89.6% 100.0%
4558866 101.1.1.465 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5338 0.75 64.0 6.39e-01 100.0% 96.0%
4215069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.06e-01 100.0% 50.0%
5053360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 5.41e-01 100.0% 56.5%
3962579 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 4.68e-01 100.0% 78.6%
3987909 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.75 66.0 4.76e-01 100.0% 36.3%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.74 60.0 5.95e-01 97.9% 88.0%
3687180 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 6.24e-01 100.0% 98.0%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.74 65.0 5.92e-01 100.0% 73.8%
3587271 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 4.57e-01 100.0% 38.1%
3326259 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.74 57.0 5.68e-01 93.8% 84.0%
5029224 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 5.88e-01 100.0% 78.3%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 6.12e-01 100.0% 96.4%
4012770 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.05e-01 100.0% 94.5%
5079851 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.68e-01 100.0% 76.7%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.62e-01 100.0% 70.0%
3997947 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 6.06e-01 95.8% 100.0%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.35e-01 100.0% 65.7%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.90e-01 97.9% 80.0%
4952347 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.05e-01 100.0% 54.1%
3910504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.85e-01 97.9% 88.0%
3958858 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.72 64.0 4.63e-01 100.0% 86.2%
3732993 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.72 60.0 5.70e-01 100.0% 85.0%
3740038 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.72 56.0 5.60e-01 91.7% 88.0%
3972430 101.1.2.213 ↗ alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.72 52.0 4.56e-01 91.7% 50.7%
5070907 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.83e-01 100.0% 95.6%
5053659 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 61.0 5.61e-01 100.0% 75.4%
5006610 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.56e-01 100.0% 76.7%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 61.0 5.73e-01 100.0% 83.3%
3282970 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 4.82e-01 89.6% 61.5%
3417440 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 59.0 4.39e-01 100.0% 37.0%
3712226 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.70 59.0 4.81e-01 100.0% 50.5%
3350998 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 5.51e-01 100.0% 86.7%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.52e-01 100.0% 94.0%
3180704 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.61 47.0 3.85e-01 100.0% 53.0%
3517207 4218.1.1.1 ↗ alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.60 49.0 4.18e-01 100.0% 71.1%
3742721 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.60 47.0 3.96e-01 100.0% 61.0%
3590723 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.54 44.0 3.64e-01 100.0% 94.0%
5064205 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.33e-01 85.4% 83.3%
D2 medium residues 84-118
PDB