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PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00160
Bact-VirPHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00160
Identity
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 333-491
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00055__D739-895
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13361.13 best | UvrD_C | 53.4 | 4.20e-14 | 98.7% | 42.1% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ceiA05 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.86 | 79.0 | 7.93e-01 | 99.4% | 93.8% |
| 2is6A04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.86 | 82.0 | 8.20e-01 | 100.0% | 98.8% |
| 1pjrA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.85 | 73.0 | 7.80e-01 | 96.9% | 100.0% |
| 1uaaA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.85 | 81.0 | 8.05e-01 | 99.4% | 99.4% |
| 4c2uA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.83 | 79.0 | 7.75e-01 | 100.0% | 93.5% |
| 7sjrB01 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.80 | 74.0 | 7.18e-01 | 97.5% | 99.4% |
| 1w36B04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.75 | 59.0 | 6.17e-01 | 100.0% | 88.4% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.64 | 31.0 | 3.48e-01 | 92.5% | 57.4% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.55 | 34.0 | 4.13e-01 | 74.2% | 99.0% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 31.0 | 3.18e-01 | 73.6% | 55.1% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 46.0 | 3.47e-01 | 91.2% | 89.2% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.54 | 30.0 | 3.83e-01 | 89.3% | 89.7% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 34.0 | 3.34e-01 | 71.1% | 58.5% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.53 | 29.0 | 3.39e-01 | 77.4% | 75.2% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 32.0 | 3.80e-01 | 92.5% | 91.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4420366 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.93 | 86.0 | 6.46e-01 | 100.0% | 45.0% |
| 4227542 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 85.0 | 5.40e-01 | 100.0% | 23.2% |
| 4266784 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.90 | 87.0 | 5.49e-01 | 100.0% | 24.8% |
| 3186716 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.89 | 86.0 | 5.29e-01 | 100.0% | 24.3% |
| 312784 | 2004.1.1.508 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, UvrD_C_2 | 0.88 | 79.0 | 5.99e-01 | 100.0% | 44.3% |
| 4006300 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.87 | 84.0 | 5.30e-01 | 100.0% | 24.4% |
| 3958289 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 83.0 | 5.87e-01 | 100.0% | 41.4% |
| 3837994 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.86 | 79.0 | 5.10e-01 | 100.0% | 24.3% |
| 3178533 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.85 | 81.0 | 4.97e-01 | 100.0% | 24.7% |
| 3785074 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.85 | 81.0 | 5.04e-01 | 100.0% | 25.2% |
| 5064458 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.85 | 70.0 | 5.21e-01 | 100.0% | 37.8% |
| 1108542 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.85 | 78.0 | 5.90e-01 | 100.0% | 45.5% |
| 3334874 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.82 | 78.0 | 5.69e-01 | 100.0% | 49.7% |
| 4465406 | 2004.1.1.569 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N | 0.78 | 73.0 | 4.62e-01 | 100.0% | 24.1% |
| 4257805 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.77 | 72.0 | 4.60e-01 | 100.0% | 26.8% |
| 3290816 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 71.0 | 4.20e-01 | 100.0% | 17.8% |
| 4410019 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.76 | 71.0 | 4.51e-01 | 100.0% | 24.1% |
| 4126026 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.75 | 70.0 | 4.45e-01 | 100.0% | 22.9% |
| 3760698 | 192.2.1.53 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF31016 | 0.57 | 23.0 | 2.47e-01 | 84.3% | 40.0% |
| 4954427 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.57 | 43.0 | 3.67e-01 | 79.9% | 81.1% |
| 3583776 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 35.0 | 3.72e-01 | 96.9% | 74.3% |
| 4028744 | 4953.1.1.19 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › RIFIN | 0.53 | 30.0 | 3.08e-01 | 88.1% | 52.5% |
| 4941676 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 21.0 | 2.06e-01 | 84.3% | 28.6% |
| 5053016 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.50 | 42.0 | 3.56e-01 | 89.9% | 74.7% |
D2
medium
residues 1-62_144-250
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13245.13 best | AAA_19 | 36.0 | 1.10e-08 | 75.1% | 69.4% |
| PF00580.28 | UvrD-helicase | 64.4 | 1.90e-17 | 47.9% | 26.2% |
| PF00580.28 | UvrD-helicase | 61.8 | 1.20e-16 | 39.6% | 22.5% |
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pjrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.95 | 82.0 | 7.58e-01 | 87.6% | 77.7% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.91 | 78.0 | 6.64e-01 | 87.6% | 84.3% |
| 3u4qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.91 | 77.0 | 6.84e-01 | 87.6% | 83.8% |
| 3e1sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 56.0 | 5.18e-01 | 89.9% | 56.6% |
| 6jimB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 53.0 | 5.72e-01 | 89.9% | 81.1% |
| 3vkwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 54.0 | 5.88e-01 | 87.6% | 85.2% |
| 3upuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 56.0 | 5.56e-01 | 92.3% | 73.9% |
| 1w4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 46.0 | 5.18e-01 | 87.6% | 83.3% |
| 2orwB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 44.0 | 4.99e-01 | 87.6% | 83.5% |
| 2xauA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 56.0 | 4.94e-01 | 89.3% | 60.8% |
| 1rifA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 53.0 | 5.09e-01 | 87.6% | 70.3% |
| 6x50A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 50.0 | 4.63e-01 | 85.8% | 63.3% |
| 1tzbA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.65 | 38.0 | 4.15e-01 | 89.9% | 69.1% |
| 4idhA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 61.0 | 5.64e-01 | 100.0% | 83.2% |
| 1w36D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 53.0 | 4.73e-01 | 87.6% | 68.4% |
| 5o6bB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 52.0 | 5.24e-01 | 88.2% | 94.3% |
| 2b8tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 43.0 | 4.66e-01 | 87.6% | 84.2% |
| 1vjrA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 38.0 | 4.52e-01 | 87.0% | 92.6% |
| 4tl8F00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 48.0 | 4.44e-01 | 94.7% | 64.3% |
| 5fhgA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 4.89e-01 | 100.0% | 76.7% |
| 3db2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 42.0 | 4.55e-01 | 86.4% | 87.1% |
| 6xm1C01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.59 | 40.0 | 4.51e-01 | 90.5% | 89.2% |
| 3evnA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 39.0 | 4.58e-01 | 87.0% | 100.0% |
| 7otsB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 48.0 | 4.06e-01 | 88.8% | 82.3% |
| 6o15A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 40.0 | 4.58e-01 | 86.4% | 100.0% |
| 3iq0A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 48.0 | 3.92e-01 | 88.2% | 73.9% |
| 1tltA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 40.0 | 4.58e-01 | 85.2% | 100.0% |
| 3q2iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 43.0 | 4.43e-01 | 91.7% | 82.7% |
| 3ezyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 40.0 | 4.52e-01 | 87.0% | 100.0% |
| 1e7wB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 51.0 | 4.45e-01 | 98.8% | 100.0% |
| 4pg4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 43.0 | 4.44e-01 | 89.3% | 83.7% |
| 5t3uB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.56 | 42.0 | 4.69e-01 | 92.3% | 99.2% |
| 3o3mB02 | 3.40.50.11890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 37.0 | 4.19e-01 | 84.6% | 88.9% |
| 1uxoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 4.47e-01 | 87.6% | 90.9% |
| 6iheA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 40.0 | 4.29e-01 | 87.0% | 87.1% |
| 4koaA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 39.0 | 4.51e-01 | 85.8% | 100.0% |
| 3f4lA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 39.0 | 4.47e-01 | 87.0% | 100.0% |
| 3e18A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 39.0 | 4.30e-01 | 86.4% | 89.7% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 4.53e-01 | 89.3% | 87.5% |
| 2ocgA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 4.00e-01 | 87.6% | 84.3% |
| 5jd6A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 4.21e-01 | 88.8% | 82.6% |
| 3e82B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 40.0 | 4.25e-01 | 88.2% | 86.3% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 49.0 | 4.59e-01 | 98.2% | 90.0% |
| 2vatL00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 3.61e-01 | 88.2% | 82.1% |
| 4ru1A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 42.0 | 4.41e-01 | 100.0% | 91.2% |
| 4hxfB02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 45.0 | 3.94e-01 | 90.5% | 93.3% |
| 2fpoC00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 4.13e-01 | 98.2% | 75.7% |
| 2qagB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.98e-01 | 88.8% | 77.6% |
| 3oqbA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 42.0 | 4.57e-01 | 87.0% | 100.0% |
| 3fhlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 38.0 | 4.17e-01 | 88.2% | 89.9% |
| 3dtyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 4.24e-01 | 89.9% | 81.2% |
| 6ebqA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 37.0 | 4.00e-01 | 87.6% | 87.7% |
| 2p4gA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 46.0 | 4.07e-01 | 96.4% | 93.5% |
| 3dhuA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 46.0 | 3.68e-01 | 98.8% | 70.3% |
| 2a4aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 3.63e-01 | 86.4% | 93.2% |
| 3vnaA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 34.0 | 3.64e-01 | 71.6% | 77.7% |
| 7xr9B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 41.0 | 4.38e-01 | 100.0% | 100.0% |
| 3aamA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 40.0 | 3.43e-01 | 83.4% | 85.1% |
| 1udxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 4.13e-01 | 88.8% | 89.7% |
| 3ayvD00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 40.0 | 3.57e-01 | 85.2% | 83.6% |
ECOD (88)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4449595 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.97 | 94.0 | 5.98e-01 | 100.0% | 37.8% |
| 3284594 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.96 | 94.0 | 5.90e-01 | 100.0% | 38.4% |
| 3964423 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 92.0 | 5.94e-01 | 100.0% | 39.5% |
| 3837994 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 92.0 | 5.96e-01 | 100.0% | 38.1% |
| 5052224 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.95 | 92.0 | 7.02e-01 | 100.0% | 77.6% |
| 3293050 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.95 | 92.0 | 6.99e-01 | 100.0% | 79.1% |
| 1108541 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.95 | 92.0 | 7.20e-01 | 100.0% | 82.2% |
| 3832703 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.95 | 92.0 | 5.80e-01 | 100.0% | 39.3% |
| 4927000 | 2008.1.1.217 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase | 0.95 | 92.0 | 5.40e-01 | 100.0% | 28.9% |
| 4006300 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 92.0 | 5.87e-01 | 100.0% | 38.6% |
| 3464895 | 2004.1.1.1107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, Viral_helicase1, UvrD_C | 0.95 | 92.0 | 5.80e-01 | 100.0% | 38.4% |
| 5005259 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.94 | 92.0 | 5.83e-01 | 100.0% | 40.7% |
| 4266784 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.94 | 91.0 | 5.86e-01 | 100.0% | 39.2% |
| 4227542 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.94 | 92.0 | 5.85e-01 | 100.0% | 39.3% |
| 4968904 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 7.07e-01 | 100.0% | 84.6% |
| 4950790 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.94 | 91.0 | 5.51e-01 | 100.0% | 47.1% |
| 4958436 | 2008.1.1.217 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase | 0.94 | 91.0 | 5.35e-01 | 100.0% | 28.1% |
| 4302341 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.94 | 91.0 | 5.44e-01 | 100.0% | 47.4% |
| 4520419 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.93 | 91.0 | 5.40e-01 | 100.0% | 46.6% |
| 4490768 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 91.0 | 5.23e-01 | 100.0% | 35.7% |
| 4153340 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.93 | 90.0 | 5.91e-01 | 100.0% | 45.0% |
| 4638111 | 2004.1.1.483 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C | 0.93 | 90.0 | 5.38e-01 | 100.0% | 45.0% |
| 4885968 | 2008.1.1.203 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase, AAA_19, UvrD_C | 0.93 | 90.0 | 5.39e-01 | 100.0% | 44.7% |
| None | — | 0.93 | 90.0 | 5.41e-01 | 100.0% | 45.9% | |
| 4472619 | 2004.1.1.483 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C | 0.93 | 90.0 | 5.40e-01 | 100.0% | 46.7% |
| 3950240 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.93 | 81.0 | 6.53e-01 | 89.3% | 87.2% |
| 4589426 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.93 | 90.0 | 5.39e-01 | 100.0% | 45.8% |
| 3988343 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.93 | 90.0 | 5.35e-01 | 100.0% | 43.8% |
| 4881420 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.93 | 90.0 | 6.95e-01 | 100.0% | 81.7% |
| None | — | 0.93 | 90.0 | 5.21e-01 | 100.0% | 36.7% | |
| 3735016 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 90.0 | 5.68e-01 | 100.0% | 35.4% |
| 4422641 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.93 | 90.0 | 5.85e-01 | 100.0% | 41.6% |
| 3186716 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 90.0 | 5.61e-01 | 100.0% | 36.9% |
| 3703321 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.93 | 89.0 | 6.88e-01 | 99.4% | 78.8% |
| 4131324 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.93 | 90.0 | 5.33e-01 | 100.0% | 45.7% |
| 3741693 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 90.0 | 5.65e-01 | 100.0% | 37.8% |
| 3385476 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 89.0 | 5.79e-01 | 100.0% | 41.6% |
| 4040709 | 2004.1.1.483 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C | 0.92 | 90.0 | 5.35e-01 | 100.0% | 46.5% |
| 4411976 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 90.0 | 5.34e-01 | 100.0% | 46.4% |
| 5063117 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.92 | 89.0 | 6.39e-01 | 100.0% | 88.1% |
| 4067536 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 89.0 | 5.34e-01 | 100.0% | 45.2% |
| 4173718 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.92 | 89.0 | 5.78e-01 | 100.0% | 42.1% |
| 4064402 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 89.0 | 5.44e-01 | 100.0% | 49.0% |
| 3601477 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.92 | 89.0 | 5.62e-01 | 100.0% | 83.4% |
| 5050559 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.92 | 89.0 | 6.37e-01 | 100.0% | 60.5% |
| 3965247 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.92 | 89.0 | 6.03e-01 | 100.0% | 88.4% |
| 3981160 | 2004.1.1.483 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C | 0.92 | 89.0 | 5.37e-01 | 100.0% | 48.5% |
| 3948292 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 88.0 | 5.37e-01 | 100.0% | 48.8% |
| 4400828 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.92 | 88.0 | 6.67e-01 | 100.0% | 85.1% |
| 3588547 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.92 | 88.0 | 5.62e-01 | 100.0% | 39.7% |
| 4615457 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.91 | 88.0 | 5.51e-01 | 100.0% | 40.4% |
| 3287099 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.91 | 88.0 | 5.45e-01 | 100.0% | 38.4% |
| 4462677 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.91 | 88.0 | 5.33e-01 | 100.0% | 46.1% |
| 3783362 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.91 | 88.0 | 5.68e-01 | 100.0% | 82.5% |
| 4930401 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.91 | 88.0 | 5.47e-01 | 100.0% | 49.2% |
| 4353243 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.91 | 79.0 | 5.65e-01 | 89.9% | 91.4% |
| 102676 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.91 | 87.0 | 6.08e-01 | 100.0% | 88.1% |
| 3290816 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.91 | 87.0 | 5.15e-01 | 100.0% | 27.1% |
| 4044381 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.90 | 87.0 | 5.27e-01 | 100.0% | 47.7% |
| 4030474 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.90 | 87.0 | 5.85e-01 | 100.0% | 53.6% |
| 4519243 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.90 | 78.0 | 6.36e-01 | 89.3% | 86.1% |
| 4950774 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.89 | 86.0 | 5.53e-01 | 100.0% | 38.8% |
| 4964810 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.89 | 85.0 | 5.15e-01 | 100.0% | 43.0% |
| 3952349 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.88 | 85.0 | 5.28e-01 | 100.0% | 37.4% |
| 4580137 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.88 | 85.0 | 5.47e-01 | 100.0% | 41.4% |
| 3959397 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.85 | 56.0 | 4.59e-01 | 74.0% | 40.0% |
| 4962524 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.83 | 80.0 | 5.22e-01 | 100.0% | 45.1% |
| 3946014 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 68.0 | 6.29e-01 | 88.8% | 90.5% |
| 3289802 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.76 | 72.0 | 4.86e-01 | 100.0% | 42.9% |
| 4439831 | 2004.1.1.193 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_19 | 0.74 | 63.0 | 5.29e-01 | 89.3% | 85.8% |
| 1030910 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.69 | 53.0 | 5.06e-01 | 87.6% | 69.2% |
| 3924486 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.68 | 58.0 | 4.06e-01 | 88.8% | 46.7% |
| 4527075 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.68 | 46.0 | 5.04e-01 | 87.6% | 82.9% |
| 3185865 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.68 | 64.0 | 4.69e-01 | 99.4% | 59.8% |
| 3588920 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.67 | 46.0 | 5.06e-01 | 88.2% | 85.0% |
| 3735988 | 2004.1.1.522 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_19 | 0.66 | 57.0 | 4.23e-01 | 89.3% | 66.9% |
| 3690329 | 2004.1.1.473 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII, AAA_11 | 0.66 | 57.0 | 4.32e-01 | 89.9% | 67.7% |
| 3946230 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.64 | 56.0 | 5.09e-01 | 92.3% | 75.9% |
| 3980599 | 2004.1.1.89 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH | 0.64 | 56.0 | 4.95e-01 | 93.5% | 67.3% |
| 4628796 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.64 | 49.0 | 5.09e-01 | 96.4% | 86.5% |
| 3936662 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.61 | 51.0 | 3.96e-01 | 87.6% | 66.4% |
| 4201038 | 2004.1.1.795 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27377 | 0.59 | 44.0 | 4.85e-01 | 89.3% | 95.0% |
| 4165287 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.58 | 53.0 | 4.99e-01 | 98.8% | 86.0% |
| 4007998 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.57 | 52.0 | 4.84e-01 | 97.6% | 82.0% |
| 3461248 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.54 | 48.0 | 4.08e-01 | 97.6% | 83.5% |
| 5024417 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.53 | 44.0 | 4.25e-01 | 89.9% | 83.3% |
| 3648870 | 2003.1.1.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 | 0.53 | 40.0 | 4.27e-01 | 97.6% | 90.0% |
| 3599511 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 42.0 | 3.73e-01 | 89.9% | 77.3% |
D3
medium
residues 63-143
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00580.28 best | UvrD-helicase | 38.5 | 1.50e-09 | 100.0% | 33.2% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c2uA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.89 | 79.0 | 7.97e-01 | 93.8% | 100.0% |
| 3lfuA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.86 | 71.0 | 7.60e-01 | 87.7% | 100.0% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.66 | 52.0 | 4.96e-01 | 88.9% | 80.4% |
| 2d6yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 45.0 | 3.45e-01 | 74.1% | 68.3% |
| 4rxtA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 47.0 | 3.83e-01 | 88.9% | 88.6% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.58 | 49.0 | 4.50e-01 | 97.5% | 87.5% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.58 | 34.0 | 3.65e-01 | 97.5% | 68.1% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 42.0 | 3.45e-01 | 79.0% | 100.0% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 33.0 | 3.22e-01 | 91.4% | 51.6% |
| 7b7tA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 46.0 | 3.72e-01 | 92.6% | 79.5% |
| 3qqaA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 39.0 | 3.26e-01 | 74.1% | 92.2% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.55 | 41.0 | 3.38e-01 | 80.2% | 100.0% |
| 1vq8I00 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.54 | 32.0 | 3.43e-01 | 100.0% | 67.1% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.54 | 34.0 | 3.05e-01 | 92.6% | 43.7% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.53 | 32.0 | 3.70e-01 | 90.1% | 85.7% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.51 | 33.0 | 3.37e-01 | 92.6% | 67.5% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.51 | 40.0 | 3.17e-01 | 91.4% | 64.8% |
| 3gcgB00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.50 | 41.0 | 3.41e-01 | 92.6% | 67.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284594 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.98 | 95.0 | 5.32e-01 | 100.0% | 12.5% |
| 3385476 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 92.0 | 5.25e-01 | 100.0% | 14.4% |
| 4266784 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.94 | 90.0 | 5.12e-01 | 100.0% | 12.9% |
| 4227542 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.94 | 89.0 | 5.10e-01 | 100.0% | 13.1% |
| 4449595 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 90.0 | 5.09e-01 | 100.0% | 12.1% |
| 3964423 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.93 | 90.0 | 5.12e-01 | 100.0% | 12.7% |
| 4881420 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.92 | 86.0 | 5.53e-01 | 100.0% | 26.9% |
| 4447276 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.89 | 80.0 | 5.20e-01 | 93.8% | 31.3% |
| 4370284 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.89 | 84.0 | 5.58e-01 | 100.0% | 36.1% |
| 4289957 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 83.0 | 4.51e-01 | 100.0% | 8.9% |
| 3178533 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.88 | 83.0 | 4.65e-01 | 100.0% | 12.7% |
| 4986874 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.86 | 80.0 | 4.57e-01 | 100.0% | 15.8% |
| 3601477 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.80 | 75.0 | 4.31e-01 | 100.0% | 11.9% |
| 3998883 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 52.0 | 4.90e-01 | 90.1% | 72.0% |
| 3202030 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.64 | 52.0 | 5.19e-01 | 96.3% | 85.9% |
| 4194508 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 36.0 | 4.26e-01 | 86.4% | 81.8% |
| 3690022 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.63 | 51.0 | 5.15e-01 | 97.5% | 91.3% |
| 3589854 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.61 | 35.0 | 3.86e-01 | 70.4% | 69.2% |
| 3738276 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.61 | 41.0 | 4.11e-01 | 70.4% | 96.5% |
| 3724985 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.60 | 48.0 | 4.27e-01 | 90.1% | 100.0% |
| 4031675 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.58 | 35.0 | 3.62e-01 | 71.6% | 62.8% |
| 4959130 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.56 | 38.0 | 4.12e-01 | 98.8% | 81.4% |
| 3270040 | 101.1.16.0 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain | 0.56 | 39.0 | 4.02e-01 | 97.5% | 75.0% |
| 3715968 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.54 | 43.0 | 4.34e-01 | 85.2% | 87.5% |
| 3990846 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 40.0 | 3.97e-01 | 96.3% | 82.2% |
D4
medium
residues 268-315_537-597
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13361.13 best | UvrD_C | 35.6 | 1.10e-08 | 32.1% | 6.6% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.92 | 89.0 | 7.01e-01 | 100.0% | 81.0% |
| 3u4qB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 84.0 | 6.43e-01 | 100.0% | 84.9% |
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 60.0 | 4.65e-01 | 100.0% | 79.2% |
| 7t85A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 58.0 | 5.08e-01 | 100.0% | 69.6% |
| 1byiA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 56.0 | 4.40e-01 | 100.0% | 63.4% |
| 1f0kA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 54.0 | 4.66e-01 | 99.1% | 80.0% |
| 3a4lB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 51.0 | 4.34e-01 | 100.0% | 56.7% |
| 7clgB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 54.0 | 4.33e-01 | 100.0% | 86.3% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.59 | 46.0 | 4.18e-01 | 97.2% | 62.1% |
| 4tl8F00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 51.0 | 4.17e-01 | 100.0% | 85.4% |
| 4b45A01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.58 | 51.0 | 4.14e-01 | 100.0% | 74.5% |
| 3e61B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 43.0 | 4.47e-01 | 100.0% | 83.7% |
| 3eeqA01 | 3.40.50.11220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 41.0 | 4.01e-01 | 99.1% | 68.3% |
| 4c7oA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 50.0 | 4.19e-01 | 100.0% | 74.7% |
| 2ac4A02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 47.0 | 4.33e-01 | 94.5% | 97.2% |
| 3i4fC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.82e-01 | 100.0% | 75.0% |
| 1iuqA02 | 3.40.1130.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.55 | 48.0 | 3.68e-01 | 100.0% | 72.1% |
| 1uanA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.54 | 48.0 | 3.90e-01 | 100.0% | 92.3% |
| 7kwdA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 46.0 | 3.30e-01 | 100.0% | 86.6% |
| 4h2dA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 46.0 | 4.09e-01 | 95.4% | 75.9% |
| 4pg4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 4.16e-01 | 100.0% | 84.4% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 47.0 | 4.14e-01 | 100.0% | 93.8% |
| 2rc5A02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 46.0 | 4.09e-01 | 100.0% | 91.3% |
| 5ljmA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 39.0 | 3.21e-01 | 88.1% | 42.9% |
| 3rxzA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.52 | 45.0 | 3.39e-01 | 98.2% | 86.4% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 4.27e-01 | 93.6% | 89.3% |
| 1zjjA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 41.0 | 4.07e-01 | 87.2% | 100.0% |
| 2amjB00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 46.0 | 3.91e-01 | 100.0% | 83.2% |
| 7uuim01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.96e-01 | 97.2% | 92.4% |
| 3c8mA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.97e-01 | 100.0% | 83.9% |
| 3mizB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 46.0 | 4.18e-01 | 99.1% | 88.4% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 44.0 | 3.97e-01 | 100.0% | 96.9% |
| 1q0qA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 4.09e-01 | 99.1% | 98.0% |
| 2q5iA03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 38.0 | 3.68e-01 | 100.0% | 69.4% |
| 3do5A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.89e-01 | 100.0% | 91.4% |
| 1vjtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 35.0 | 3.43e-01 | 70.6% | 69.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052225 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.96 | 93.0 | 6.24e-01 | 100.0% | 95.9% |
| 3284594 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 92.0 | 5.40e-01 | 100.0% | 50.6% |
| 3964423 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 93.0 | 5.48e-01 | 100.0% | 52.3% |
| 3958289 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.95 | 92.0 | 5.86e-01 | 100.0% | 81.6% |
| 4449595 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.95 | 91.0 | 5.40e-01 | 100.0% | 50.1% |
| 4420366 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.95 | 92.0 | 6.15e-01 | 100.0% | 95.9% |
| 4227542 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.95 | 91.0 | 5.41e-01 | 100.0% | 49.5% |
| 4266784 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.94 | 91.0 | 5.39e-01 | 100.0% | 51.3% |
| 4006300 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.94 | 91.0 | 5.39e-01 | 100.0% | 49.8% |
| 312784 | 2004.1.1.508 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, UvrD_C_2 | 0.94 | 91.0 | 6.13e-01 | 100.0% | 94.0% |
| 4969305 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 89.0 | 5.92e-01 | 100.0% | 95.0% |
| 4173718 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.92 | 88.0 | 5.27e-01 | 100.0% | 46.7% |
| 4126026 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.89 | 84.0 | 4.94e-01 | 100.0% | 49.2% |
| 4465325 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 82.0 | 5.20e-01 | 100.0% | 82.2% |
| 4098321 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.85 | 81.0 | 5.19e-01 | 100.0% | 36.0% |
| 4064402 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.78 | 73.0 | 4.25e-01 | 100.0% | 39.9% |
| 4520419 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.76 | 72.0 | 4.10e-01 | 100.0% | 44.0% |
| 5060606 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 58.0 | 4.82e-01 | 100.0% | 90.8% |
| 5009864 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.60 | 56.0 | 4.38e-01 | 100.0% | 54.5% |
| 4969465 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.60 | 55.0 | 4.01e-01 | 100.0% | 42.4% |
| 3412271 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 53.0 | 4.53e-01 | 100.0% | 75.6% |
| 5010471 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.59 | 53.0 | 4.41e-01 | 100.0% | 69.2% |
| 4934575 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.59 | 52.0 | 4.34e-01 | 100.0% | 56.5% |
| 4968277 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.59 | 54.0 | 4.32e-01 | 100.0% | 61.0% |
| 4600906 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 52.0 | 4.36e-01 | 100.0% | 57.4% |
| 3679686 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 51.0 | 4.00e-01 | 100.0% | 49.8% |
| 3456221 | 2004.1.1.163 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 | 0.55 | 43.0 | 4.60e-01 | 100.0% | 97.9% |
| 3650238 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.54 | 45.0 | 4.20e-01 | 100.0% | 72.6% |
| 4632988 | 2007.1.14.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase | 0.54 | 45.0 | 4.06e-01 | 93.6% | 85.2% |
| 4946378 | 2007.1.4.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase_C | 0.53 | 42.0 | 4.20e-01 | 100.0% | 82.6% |
| 4136793 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.53 | 39.0 | 3.17e-01 | 77.1% | 56.2% |
| 3188709 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 46.0 | 4.08e-01 | 100.0% | 66.9% |
| 3259139 | 2007.6.1.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › GKRP_SIS_N | 0.51 | 44.0 | 3.42e-01 | 100.0% | 71.3% |
| 4594574 | 2007.6.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS, GKRP_SIS_N | 0.51 | 44.0 | 3.70e-01 | 100.0% | 69.0% |
| 3552004 | 2007.6.1.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › GKRP_SIS_N | 0.51 | 44.0 | 3.33e-01 | 100.0% | 56.3% |
| 3188815 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.50 | 44.0 | 3.83e-01 | 100.0% | 91.1% |
| 3634265 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 41.0 | 3.18e-01 | 94.5% | 88.4% |
D5
medium
residues 316-331_498-536
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13361.13 best | UvrD_C | 45.9 | 8.00e-12 | 98.2% | 10.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.93 | 87.0 | 5.63e-01 | 100.0% | 27.0% |
| 3u4qB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 75.0 | 4.85e-01 | 100.0% | 38.1% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 65.0 | 4.04e-01 | 100.0% | 46.5% |
| 7r7jA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 54.0 | 3.84e-01 | 100.0% | 32.8% |
| 7n29C01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.58 | 47.0 | 3.50e-01 | 92.7% | 41.8% |
| 2plwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 44.0 | 3.23e-01 | 94.5% | 87.4% |
| 3ay3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 43.0 | 3.02e-01 | 92.7% | 86.3% |
| 4ycsA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 40.0 | 3.26e-01 | 83.6% | 64.2% |
| 5tshA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 2.89e-01 | 96.4% | 81.2% |
| 2pk3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.02e-01 | 100.0% | 57.1% |
| 4ivvA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.52 | 40.0 | 3.00e-01 | 92.7% | 75.3% |
| 2g6tA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 36.0 | 3.21e-01 | 80.0% | 74.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4677652 | 2004.1.1.1017 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12, UvrD_C | 0.77 | 70.0 | 4.31e-01 | 100.0% | 19.0% |
| 3980676 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.73 | 62.0 | 4.02e-01 | 92.7% | 23.5% |
| None | — | 0.57 | 44.0 | 3.30e-01 | 90.9% | 82.4% | |
| 4927756 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 36.0 | 2.78e-01 | 92.7% | 27.7% |
| 4608917 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.54 | 45.0 | 3.34e-01 | 100.0% | 87.9% |
| 4033385 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 39.0 | 2.93e-01 | 81.8% | 32.5% |