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PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00164

Bact-Vir

PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00164

Identity

Kingdom:
phage

Quality

85.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-70
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 36.0 3.44e-01 77.1% 51.2%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 38.0 3.79e-01 70.0% 87.8%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 45.0 4.34e-01 91.4% 80.5%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 40.0 4.26e-01 78.6% 93.7%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 46.0 3.62e-01 91.4% 51.8%
4f03A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 35.0 3.17e-01 71.4% 86.7%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 33.0 3.64e-01 70.0% 83.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3414632 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 52.0 4.72e-01 72.9% 54.4%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 39.0 3.67e-01 72.9% 44.7%
3798139 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 47.0 4.27e-01 71.4% 93.7%
3582138 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 46.0 4.12e-01 71.4% 91.0%
5059962 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 37.0 4.06e-01 71.4% 65.5%
3259718 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 48.0 4.23e-01 81.4% 73.3%
3269935 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 53.0 4.63e-01 97.1% 90.9%
3914982 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.61 43.0 4.65e-01 74.3% 93.3%
3726465 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 42.0 4.36e-01 78.6% 93.8%
3906952 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.57 43.0 3.91e-01 85.7% 69.2%
3430371 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 43.0 3.98e-01 87.1% 72.6%
3828987 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 37.0 3.38e-01 70.0% 84.2%
3711823 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.53 43.0 3.54e-01 100.0% 48.8%
3404271 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.52 39.0 4.05e-01 80.0% 96.9%
3715448 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.52 44.0 3.39e-01 91.4% 56.0%