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PHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00176
Bact-VirPHAGE-A9--js4906-26-5_S28_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00176
Identity
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-93
D2
medium
residues 94-205
D3
medium
residues 208-238
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ynmC03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.61 | 43.0 | 3.21e-01 | 100.0% | 80.5% |
| 2dbfA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 40.0 | 3.08e-01 | 93.5% | 31.9% |
D4
medium
residues 241-303
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 44.0 | 3.83e-01 | 76.2% | 41.6% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.62 | 47.0 | 3.24e-01 | 81.0% | 58.0% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.62 | 52.0 | 4.33e-01 | 95.2% | 85.7% |
| 1ro7A00 | 3.90.1480.10 | Alpha Beta › Alpha-Beta Complex › sialyltransferase cstii, chain A › Alpha-2,3-sialyltransferase | 0.62 | 52.0 | 3.54e-01 | 100.0% | 66.1% |
| 2l22A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.61 | 38.0 | 3.37e-01 | 85.7% | 42.9% |
| 3npiB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 42.0 | 3.04e-01 | 76.2% | 56.7% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 46.0 | 3.19e-01 | 85.7% | 55.3% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 45.0 | 4.26e-01 | 82.5% | 89.7% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 44.0 | 3.89e-01 | 77.8% | 86.5% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.58 | 42.0 | 4.15e-01 | 77.8% | 100.0% |
| 2mr7A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.58 | 38.0 | 3.42e-01 | 81.0% | 47.3% |
| 6czfA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 43.0 | 2.78e-01 | 82.5% | 72.0% |
| 2bhsB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 47.0 | 3.54e-01 | 95.2% | 51.2% |
| 2yorA00 | 1.10.489.10 | Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like | 0.56 | 46.0 | 2.92e-01 | 92.1% | 67.3% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 46.0 | 2.95e-01 | 93.7% | 39.5% |
| 1tdjA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.21e-01 | 96.8% | 46.6% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.55 | 43.0 | 4.48e-01 | 87.3% | 100.0% |
| 1f2dA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 44.0 | 3.14e-01 | 93.7% | 29.2% |
| 1a5aB02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 42.0 | 2.98e-01 | 92.1% | 57.5% |
| 2my5A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 38.0 | 3.45e-01 | 98.4% | 55.1% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 2.50e-01 | 95.2% | 17.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3431770 | 148.1.3.180 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › zf-RVT | 0.84 | 58.0 | 4.25e-01 | 71.4% | 54.0% |
| 3833442 | 142.1.1.29 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › zf-RVT | 0.83 | 57.0 | 4.12e-01 | 71.4% | 50.0% |
| 4610257 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.82 | 57.0 | 5.71e-01 | 73.0% | 84.6% |
| 3804317 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.81 | 55.0 | 4.48e-01 | 71.4% | 69.9% |
| 3813679 | 130.1.1.60 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › zf-RVT | 0.80 | 55.0 | 4.03e-01 | 71.4% | 52.3% |
| 3816142 | 161.1.1.12 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › zf-RVT | 0.79 | 54.0 | 4.04e-01 | 71.4% | 52.7% |
| 3811948 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.76 | 53.0 | 5.14e-01 | 74.6% | 65.7% |
| 3807996 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.75 | 51.0 | 5.09e-01 | 73.0% | 69.2% |
| 4890990 | 2004.1.1.181 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 | 0.74 | 64.0 | 4.68e-01 | 100.0% | 48.6% |
| 3327321 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.74 | 50.0 | 4.46e-01 | 71.4% | 57.8% |
| 3607058 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.68 | 44.0 | 3.29e-01 | 76.2% | 25.5% |
| 3587266 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.62 | 55.0 | 4.10e-01 | 98.4% | 71.6% |
| 5053903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 44.0 | 3.60e-01 | 76.2% | 40.8% |
| 4507743 | 2003.1.1.76 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C | 0.62 | 43.0 | 3.15e-01 | 74.6% | 31.7% |
| 3404120 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.59 | 43.0 | 3.31e-01 | 77.8% | 83.4% |
| 3782428 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 45.0 | 3.79e-01 | 87.3% | 70.8% |
| 3468522 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.59 | 33.0 | 3.56e-01 | 87.3% | 63.6% |
| 5048295 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.58 | 48.0 | 3.55e-01 | 93.7% | 62.2% |
| 4324618 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.58 | 41.0 | 3.19e-01 | 76.2% | 76.0% |
| 4170189 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.58 | 49.0 | 3.07e-01 | 95.2% | 34.2% |
| 3961879 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.58 | 40.0 | 3.52e-01 | 73.0% | 82.1% |
| 2483676 | 2003.4.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes | 0.58 | 48.0 | 3.66e-01 | 93.7% | 55.8% |
| 3928401 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 43.0 | 4.39e-01 | 79.4% | 93.3% |
| 3929297 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.58 | 44.0 | 3.35e-01 | 93.7% | 32.4% |
| 4038750 | 101.25.1.1 ↗ | alpha arrays › HTH › CofE insertion domain › CofE insertion domain › F420_ligase | 0.58 | 45.0 | 4.11e-01 | 90.5% | 78.9% |
| 3507767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.57 | 49.0 | 4.36e-01 | 100.0% | 65.3% |
| 3952490 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.57 | 41.0 | 3.65e-01 | 76.2% | 93.3% |
| 5030767 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.57 | 43.0 | 4.40e-01 | 82.5% | 93.3% |
| 4064010 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.56 | 46.0 | 3.36e-01 | 93.7% | 69.5% |
| 4944033 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.56 | 46.0 | 3.39e-01 | 93.7% | 62.2% |
| 4988154 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.56 | 45.0 | 3.30e-01 | 92.1% | 57.4% |
| 3297828 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.56 | 45.0 | 3.18e-01 | 93.7% | 87.1% |
| 4947936 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.56 | 45.0 | 3.35e-01 | 93.7% | 60.0% |
| 4978108 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.55 | 45.0 | 3.39e-01 | 95.2% | 34.4% |
| 4934054 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.55 | 46.0 | 3.29e-01 | 96.8% | 54.5% |
| 3742012 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.54 | 44.0 | 2.83e-01 | 93.7% | 32.1% |
| 2756362 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.53 | 43.0 | 3.16e-01 | 95.2% | 64.5% |
| 3188660 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.53 | 37.0 | 3.27e-01 | 95.2% | 51.1% |
| 3934366 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.50 | 36.0 | 2.32e-01 | 76.2% | 58.8% |