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PIF-1
Euk-VirChoristoneura_rosaceana_nucleopolyhedrovirus
PIF-1__YP_008378392__Choristoneura_rosaceana_nucleopolyhedrovirus__58094
Identity
- Accession:
- YP_008378392 ↗
- Protein ID:
- PIF-1
- Kingdom:
- euk
Quality
72.8
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Choristoneura_rosaceana_nucleopolyhedrovirus
TaxID: 58094
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 416-524
Domain cluster:
rep: pif-1__YP_009552247__Malacosoma_neustria_nucleopolyhedrovirus__38012__D405-533
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 68.0 | 1.00e-18 | 100.0% | 23.6% |
D2
medium
residues 67-117
Domain cluster:
rep: pif1__YP_009133228__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929__D70-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 57.5 | 1.50e-15 | 100.0% | 8.8% |
D3
medium
residues 131-210
D4
medium
residues 215-320
Domain cluster:
rep: pif-1__YP_008720011__Clostera_anastomosis_granulovirus_Henan__1986291__D224-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 123.3 | 1.80e-35 | 100.0% | 19.9% |
D5
medium
residues 321-415
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 50.5 | 2.10e-13 | 100.0% | 13.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6a2bA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 4.48e-01 | 86.3% | 84.3% |
| 1o0vA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 47.0 | 4.53e-01 | 93.7% | 94.5% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 4.54e-01 | 95.8% | 98.8% |
| 3a35A01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 38.0 | 3.88e-01 | 95.8% | 76.1% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 37.0 | 3.88e-01 | 94.7% | 77.5% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 4.16e-01 | 95.8% | 72.1% |
| 5oj2B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.96e-01 | 85.3% | 77.1% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 43.0 | 4.50e-01 | 97.9% | 97.7% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 37.0 | 3.67e-01 | 91.6% | 72.0% |
| 3zduA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 34.0 | 3.73e-01 | 90.5% | 86.8% |
| 1qgwA00 | 3.90.510.10 | Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain | 0.50 | 31.0 | 3.33e-01 | 70.5% | 73.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3271375 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 37.0 | 2.97e-01 | 95.8% | 31.7% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.58 | 44.0 | 4.48e-01 | 93.7% | 80.0% |
| 3367922 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.57 | 41.0 | 4.17e-01 | 94.7% | 75.8% |
| 4937999 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 44.0 | 4.49e-01 | 98.9% | 91.1% |
| 3382396 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 39.0 | 4.11e-01 | 93.7% | 85.9% |
| 3451456 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.52 | 41.0 | 4.13e-01 | 91.6% | 83.2% |
| 3611407 | 306.10.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 | 0.52 | 43.0 | 3.89e-01 | 89.5% | 67.2% |
| 4870262 | 11.1.1.318 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N | 0.52 | 41.0 | 4.20e-01 | 94.7% | 86.2% |
| 3640407 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 40.0 | 2.79e-01 | 84.2% | 48.6% |
| 3275908 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.98e-01 | 72.6% | 98.6% |
| 4937023 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.51 | 43.0 | 4.27e-01 | 98.9% | 89.0% |
| 4295512 | 11.1.1.612 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5443 | 0.50 | 43.0 | 4.22e-01 | 94.7% | 88.6% |
| 3489007 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.50 | 43.0 | 3.08e-01 | 95.8% | 68.1% |
| 3369744 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 42.0 | 3.92e-01 | 89.5% | 77.4% |
| 4959597 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.50 | 36.0 | 3.01e-01 | 75.8% | 84.1% |