←Back to structures

PIF-1

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

PIF-1__YP_009552680__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

Accession:: YP_009552680 ↗
Protein ID:: PIF-1
Kingdom:: euk

Quality

73.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Operophtera_brumata_nucleopolyhedrovirus

TaxID: 1046267

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 398-516

PDB

D2 medium residues 145-209

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05092.18 best	PIF	94.4	1.00e-26	100.0%	12.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k2sB00	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.68	52.0	5.51e-01	100.0%	98.2%
3fbyA01	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.55	35.0	3.85e-01	83.1%	89.4%
4lvnP00	3.30.70.2380	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	3.68e-01	84.6%	71.6%
3rhtA00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.51	38.0	2.67e-01	83.1%	80.6%
2joiA00	3.30.310.190	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein ›	0.51	39.0	3.49e-01	84.6%	72.9%
3irpX01	2.60.40.1280	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	38.0	2.99e-01	83.1%	57.2%
4g1uD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	42.0	2.89e-01	95.4%	89.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3489111	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.58	51.0	3.44e-01	100.0%	36.0%
3703829	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.56	40.0	3.30e-01	78.5%	87.4%
3858014	389.1.1.114 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TSP1_TSH7A-B_C	0.56	34.0	3.88e-01	87.7%	100.0%
3998140	387.1.1.34 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB	0.54	39.0	4.39e-01	83.1%	100.0%
4999182	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	40.0	3.83e-01	95.4%	69.3%
3904364	389.1.3.22 ↗	few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TSP1_TSH7A-B_C	0.53	33.0	3.72e-01	89.2%	100.0%
3499939	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.53	44.0	3.27e-01	93.8%	69.0%
3639134	325.1.8.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein	0.52	37.0	3.69e-01	95.4%	72.9%
3488211	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.52	43.0	3.86e-01	90.8%	81.1%
3483120	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.52	39.0	4.00e-01	81.5%	100.0%
3198376	325.1.8.3 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N	0.52	36.0	3.59e-01	92.3%	70.0%

D3 medium residues 211-277

PDB

Domain cluster: rep: per_os_infectivity_factor-1__YP_003422426__Pseudalatia_unipuncta_granulovirus__36355__D209-272

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05092.18 best	PIF	83.4	2.20e-23	97.0%	10.9%

D4 medium residues 278-397

PDB

Domain cluster: rep: hypothetical_protein__YP_002300631__Adoxophyes_orana_nucleopolyhedrovirus__542343__D260-395

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05092.18 best	PIF	56.7	2.70e-15	95.8%	19.2%