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PIF-1
Euk-VirSpodoptera_exempta_nucleopolyhedrovirus
PIF-1__YP_010086451__Spodoptera_exempta_nucleopolyhedrovirus__1242863
Identity
- Accession:
- YP_010086451 ↗
- Protein ID:
- PIF-1
- Kingdom:
- euk
Quality
68.4
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Spodoptera_exempta_nucleopolyhedrovirus
TaxID: 1242863
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-149
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 116.8 | 1.70e-33 | 100.0% | 15.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 36.0 | 3.23e-01 | 80.7% | 42.6% |
| 6bioA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 33.0 | 4.00e-01 | 71.6% | 96.5% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.51 | 35.0 | 3.32e-01 | 71.6% | 85.8% |
| 1jmuB04 | 2.60.120.420 | Mainly Beta › Sandwich › Jelly Rolls › Membrane penetration protein mu1, Chain B, domain 4 | 0.50 | 39.0 | 3.04e-01 | 85.2% | 70.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3895865 | 3715.1.1.3 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › PF30893 | 0.66 | 39.0 | 4.18e-01 | 80.7% | 68.0% |
| 3396896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 43.0 | 4.63e-01 | 78.4% | 82.7% |
| None | — | 0.55 | 45.0 | 3.78e-01 | 89.8% | 91.3% | |
| None | — | 0.55 | 45.0 | 3.78e-01 | 89.8% | 91.3% | |
| 3644131 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 46.0 | 3.20e-01 | 100.0% | 70.7% |
| 4177746 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.51 | 33.0 | 3.14e-01 | 70.5% | 53.6% |
| 4991736 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.50 | 36.0 | 3.53e-01 | 77.3% | 91.0% |
D2
medium
residues 150-214
Domain cluster:
rep: PIF-1__YP_009552680__Operophtera_brumata_nucleopolyhedrovirus__1046267__D145-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 89.2 | 3.90e-25 | 100.0% | 11.9% |
D3
medium
residues 215-315
Domain cluster:
rep: pif-1__YP_008720011__Clostera_anastomosis_granulovirus_Henan__1986291__D224-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 72.8 | 3.60e-20 | 100.0% | 19.7% |