PIF-3

Euk-Vir

Homarus_gammarus_nudivirus

PIF-3__YP_010087723__Homarus_gammarus_nudivirus__2509616

Identity

71.0 mean pLDDT

Naldaviricetes› Lefavirales› Nudiviridae› Gammanudivirus› Homarus_gammarus_nudivirus

TaxID: 2509616

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 61-178

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05006.18 best	PIF3	42.2	1.30e-10	100.0%	75.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dqlA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	35.0	3.58e-01	94.1%	69.6%
2qbyB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	33.0	3.64e-01	87.3%	85.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5049822	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.57	23.0	3.28e-01	78.0%	88.9%
4959599	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.54	36.0	3.69e-01	94.1%	70.2%
4941287	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.53	30.0	3.34e-01	83.1%	71.1%
3667109	101.1.2.111 ↗	alpha arrays › HTH › HTH › winged helix domain › RQC	0.52	37.0	3.66e-01	72.9%	73.6%
4998580	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	31.0	3.46e-01	87.3%	76.7%
4937951	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.52	31.0	3.37e-01	83.9%	70.0%
5035685	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.50	35.0	3.48e-01	94.1%	67.7%