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PIF-5c
Euk-VirTipula_oleracea_nudivirus
PIF-5c__YP_009116749__Tipula_oleracea_nudivirus__1546257
Identity
- Accession:
- YP_009116749 ↗
- Protein ID:
- PIF-5c
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Taxonomy
TaxID: 1546257
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-114
D2
high
residues 136-243_355-375
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 26.0 | 3.48e-01 | 88.4% | 93.9% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 27.0 | 3.20e-01 | 79.1% | 75.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4098142 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.52 | 26.0 | 3.25e-01 | 79.1% | 77.5% |
| 3578925 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.51 | 32.0 | 3.52e-01 | 94.6% | 75.2% |
| 3615051 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 40.0 | 2.93e-01 | 82.2% | 94.8% |
| 3783021 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.51 | 33.0 | 3.41e-01 | 85.3% | 69.2% |
D3
medium
residues 246-354
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 36.0 | 4.42e-01 | 89.9% | 97.1% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 32.0 | 3.87e-01 | 87.2% | 91.3% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.53 | 46.0 | 3.97e-01 | 99.1% | 97.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287413 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.61 | 43.0 | 4.85e-01 | 75.2% | 98.8% |
| 2716468 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 33.0 | 3.64e-01 | 85.3% | 70.0% |
| 4675105 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.54 | 33.0 | 3.64e-01 | 85.3% | 76.5% |
| 4448496 | 101.1.4.27 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N | 0.54 | 32.0 | 3.93e-01 | 86.2% | 92.9% |
| 4216060 | 101.1.4.27 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N | 0.54 | 33.0 | 3.80e-01 | 86.2% | 82.5% |
| 4410932 | 101.1.4.27 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N | 0.54 | 32.0 | 3.89e-01 | 86.2% | 92.9% |
| 4335698 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.53 | 32.0 | 3.49e-01 | 86.2% | 72.2% |
| 4952242 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.53 | 32.0 | 3.84e-01 | 95.4% | 95.7% |
| 3227298 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.50 | 26.0 | 3.36e-01 | 72.5% | 96.4% |