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PIF1_DNA_helicase-like_protein

Euk-Vir

Phaeocystis_globosa_virus

PIF1_DNA_helicase-like_protein__YP_008052747__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052747 ↗
Protein ID:
PIF1_DNA_helicase-like_protein
Kingdom:
euk

Quality

80.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-184
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF05970.21 best PIF1 113.9 1.20e-32 97.2% 77.6%
PF13604.13 AAA_30 41.1 2.30e-10 87.6% 59.2%
PF13245.13 AAA_19 51.8 1.40e-13 83.2% 97.0%
D2 high residues 194-249_388-449
PDB
Domain cluster: rep: IMGVR_UViG_3300009509_000914-3300009509-Ga0123573_1001185116__D490-580_655-727
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w36D03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 73.0 6.31e-01 94.1% 100.0%
3upuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.81 67.0 6.44e-01 85.6% 98.5%
3e1sA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 71.0 6.61e-01 95.8% 97.2%
1pjrA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 66.0 5.40e-01 91.5% 90.5%
6vsxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 64.0 5.76e-01 91.5% 91.2%
4b3fX03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 65.0 5.32e-01 92.4% 85.6%
3b85A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 52.0 4.45e-01 72.9% 72.2%
5rl9B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 64.0 5.86e-01 91.5% 91.9%
2xzlA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 64.0 5.19e-01 92.4% 84.9%
3dmnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 64.0 5.70e-01 92.4% 89.4%
3u4qA04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 62.0 4.70e-01 91.5% 86.7%
6jimB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 62.0 5.91e-01 91.5% 90.2%
4idhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 51.0 4.21e-01 75.4% 69.7%
1rifA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 48.0 4.13e-01 72.9% 75.5%
3vkwA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 58.0 5.37e-01 91.5% 83.1%
5fhgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 50.0 4.28e-01 79.7% 70.5%
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 45.0 3.81e-01 70.3% 70.7%
1urhA02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.65 45.0 4.57e-01 70.3% 96.5%
5lstA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 46.0 3.77e-01 72.9% 74.4%
6s3eB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 50.0 4.24e-01 81.4% 75.1%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 44.0 3.22e-01 70.3% 50.9%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 44.0 3.89e-01 70.3% 73.6%
4crwB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 4.74e-01 91.5% 92.4%
4hh4C01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 42.0 3.61e-01 70.3% 68.9%
2hyiC02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 4.62e-01 91.5% 89.2%
2hhgA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.61 46.0 4.48e-01 79.7% 85.6%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 43.0 3.53e-01 73.7% 57.7%
4ceiB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 4.38e-01 90.7% 91.1%
1oywA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 4.70e-01 87.3% 100.0%
7zp2C02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.60 41.0 3.79e-01 70.3% 87.8%
3d3uA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.58 44.0 3.96e-01 80.5% 88.4%
1x7oA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 41.0 3.66e-01 77.1% 79.8%
3ua3B01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.56 45.0 3.44e-01 88.1% 100.0%
3sjnA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 42.0 3.36e-01 83.9% 76.4%
2aqwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 45.0 3.40e-01 100.0% 97.2%
3focA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 39.0 3.00e-01 84.7% 94.5%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385675 2004.1.1.298 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase 0.94 91.0 8.33e-01 100.0% 90.3%
3716782 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.93 88.0 8.50e-01 100.0% 89.2%
3890170 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 88.0 8.21e-01 100.0% 87.1%
3610095 2004.1.1.298 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase 0.91 88.0 7.55e-01 100.0% 85.9%
3600234 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 88.0 7.55e-01 100.0% 89.4%
3891480 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.91 88.0 5.95e-01 100.0% 34.1%
3363137 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.90 86.0 8.16e-01 100.0% 88.9%
3882209 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 85.0 8.06e-01 100.0% 86.7%
3605939 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 86.0 8.12e-01 100.0% 92.6%
3777141 2004.1.1.298 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase 0.89 85.0 7.77e-01 100.0% 80.7%
3267758 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.88 84.0 8.00e-01 100.0% 90.4%
3789466 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 84.0 7.51e-01 100.0% 76.8%
3663731 2004.1.1.496 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 0.87 72.0 6.80e-01 84.7% 97.0%
3591776 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 83.0 7.43e-01 100.0% 92.3%
3601738 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 79.0 7.76e-01 100.0% 89.6%
3680771 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.87 80.0 6.03e-01 96.6% 64.3%
3648251 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 80.0 6.31e-01 96.6% 96.8%
3682236 2004.1.1.496 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 0.87 80.0 6.93e-01 96.6% 98.2%
3676955 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.87 82.0 7.03e-01 99.2% 97.1%
3926523 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 81.0 7.14e-01 99.2% 97.0%
3682367 2004.1.1.496 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 0.86 73.0 6.96e-01 88.1% 97.8%
3658525 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.86 73.0 6.85e-01 88.1% 94.3%
3656784 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.86 82.0 6.96e-01 100.0% 92.8%
3671414 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 76.0 6.47e-01 92.4% 98.3%
3677902 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.86 72.0 4.41e-01 86.4% 21.2%
3682824 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 73.0 6.91e-01 88.1% 94.1%
3683589 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.86 81.0 5.44e-01 100.0% 43.8%
3807611 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 81.0 7.28e-01 100.0% 98.7%
3242523 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 79.0 7.58e-01 96.6% 99.2%
3372759 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.85 79.0 5.81e-01 96.6% 54.8%
3305691 2004.1.1.298 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase 0.85 80.0 7.21e-01 99.2% 99.4%
3645109 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 80.0 4.97e-01 100.0% 27.7%
3370015 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 80.0 6.83e-01 100.0% 86.0%
3316169 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 78.0 5.15e-01 99.2% 51.6%
3719002 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.83 79.0 7.51e-01 100.0% 88.1%
3372829 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 71.0 6.60e-01 90.7% 99.3%
3958144 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 76.0 6.65e-01 99.2% 98.8%
3596401 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 77.0 7.33e-01 100.0% 87.4%
3362146 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.82 77.0 6.30e-01 100.0% 77.0%
4610954 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 73.0 7.45e-01 94.1% 100.0%
3662519 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.81 64.0 7.00e-01 100.0% 97.0%
3603695 2004.1.1.496 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 0.80 71.0 6.01e-01 94.1% 96.8%
3874017 2004.1.1.496 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 0.80 71.0 6.08e-01 94.9% 98.3%
3777175 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.79 72.0 6.27e-01 96.6% 100.0%
3336111 2004.1.1.869 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Pif1_2B_dom 0.78 72.0 6.00e-01 98.3% 100.0%
3307009 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 64.0 6.13e-01 89.8% 99.3%
3760903 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.75 62.0 5.32e-01 87.3% 97.2%
3590301 2004.1.1.508 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, UvrD_C_2 0.75 65.0 5.64e-01 91.5% 91.2%
3589167 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.74 63.0 5.88e-01 88.1% 95.7%
3558535 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 62.0 5.32e-01 88.1% 97.2%
3944062 2004.1.1.89 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH 0.74 53.0 4.06e-01 72.9% 61.2%
None — 0.74 66.0 4.90e-01 93.2% 54.4%
3679203 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.74 55.0 4.83e-01 78.0% 68.2%
1230975 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.73 64.0 5.70e-01 92.4% 89.4%
2095415 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.73 64.0 5.67e-01 91.5% 85.6%
3783362 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.73 63.0 3.88e-01 91.5% 50.4%
4029484 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.72 63.0 4.53e-01 92.4% 73.7%
3561762 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 60.0 5.07e-01 88.1% 91.1%
3593770 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 64.0 5.11e-01 93.2% 82.3%
3391041 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 63.0 3.76e-01 93.2% 22.0%
3549903 2004.1.1.1002 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII, AAA_11, AAA_12 0.72 63.0 3.81e-01 93.2% 24.6%
3174411 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.72 52.0 3.18e-01 74.6% 34.0%
1142006 2004.1.1.62 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.72 60.0 6.24e-01 93.2% 94.5%
5023408 2004.1.1.89 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH 0.72 52.0 4.27e-01 75.4% 73.8%
4030936 2004.1.1.102 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase 0.71 50.0 3.63e-01 72.9% 47.1%
4031261 2004.1.1.102 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase 0.71 50.0 3.62e-01 72.9% 45.2%
3942031 2004.1.1.102 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase 0.70 51.0 3.70e-01 74.6% 65.9%
None — 0.70 61.0 3.83e-01 91.5% 23.1%
3959799 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 51.0 4.07e-01 75.4% 68.7%
3490630 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.66 48.0 4.72e-01 76.3% 86.2%
3980676 2004.1.1.203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.64 58.0 4.62e-01 98.3% 98.7%
3708423 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.63 50.0 4.28e-01 86.4% 84.6%
4124143 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.63 52.0 4.21e-01 89.8% 84.9%
3980599 2004.1.1.89 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH 0.62 53.0 4.12e-01 91.5% 80.4%
3884644 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.61 48.0 4.77e-01 82.2% 91.7%
4002275 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.55 42.0 2.93e-01 83.1% 90.2%
3224330 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 45.0 4.24e-01 92.4% 75.7%
4441677 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.53 42.0 3.29e-01 84.7% 72.8%
3447290 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.53 44.0 4.01e-01 92.4% 79.4%
4484379 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.51 37.0 3.41e-01 77.1% 85.0%
D3 high residues 260-271_296-385
PDB
Domain cluster: rep: helicase-2__YP_003429432__Artogeia_rapae_granulovirus__362830__D268-377
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21530.4 best Pif1_2B_dom 31.0 2.30e-07 46.1% 89.4%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 42.0 6.15e-01 70.6% 98.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 6.03e-01 100.0% 95.7%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 41.0 4.88e-01 100.0% 74.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 41.0 5.45e-01 71.6% 94.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 43.0 5.50e-01 95.1% 93.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 43.0 5.05e-01 79.4% 80.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 39.0 4.88e-01 77.5% 82.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 5.34e-01 76.5% 100.0%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.73 41.0 5.03e-01 70.6% 86.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 44.0 5.25e-01 75.5% 95.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.41e-01 94.1% 92.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 5.02e-01 95.1% 89.9%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 48.0 4.96e-01 83.3% 75.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 4.66e-01 97.1% 90.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.68 40.0 4.12e-01 75.5% 60.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 38.0 4.24e-01 99.0% 69.9%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 45.0 5.10e-01 77.5% 98.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 43.0 4.76e-01 76.5% 88.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 38.0 3.42e-01 76.5% 44.7%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.07e-01 72.5% 78.4%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.32e-01 99.0% 74.0%
3wwvA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 4.29e-01 71.6% 93.8%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.06e-01 81.4% 85.7%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 37.0 3.71e-01 97.1% 68.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.18e-01 98.0% 86.5%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 46.0 3.80e-01 98.0% 85.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 4.20e-01 90.2% 93.0%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 4.10e-01 98.0% 98.7%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 36.0 3.54e-01 73.5% 87.0%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.50 46.0 3.61e-01 100.0% 88.6%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3255737 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.88 83.0 7.81e-01 100.0% 95.8%
3363136 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.86 81.0 7.63e-01 99.0% 95.8%
3707168 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.86 82.0 5.90e-01 100.0% 96.5%
3251896 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.86 82.0 7.79e-01 100.0% 95.7%
3701220 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 81.0 7.12e-01 99.0% 98.6%
3491785 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.85 80.0 7.68e-01 100.0% 98.3%
3708644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 80.0 7.68e-01 100.0% 94.8%
3700780 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.85 80.0 6.96e-01 99.0% 98.6%
3220797 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.85 79.0 7.89e-01 99.0% 98.1%
3788541 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.84 80.0 6.38e-01 100.0% 97.8%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.83 78.0 7.73e-01 100.0% 97.1%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 78.0 7.56e-01 100.0% 98.2%
3302391 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.82 57.0 5.06e-01 71.6% 55.0%
3610097 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.82 77.0 6.82e-01 100.0% 94.3%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.81 73.0 6.87e-01 96.1% 98.3%
None — 0.81 61.0 3.94e-01 77.5% 20.7%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.81 43.0 5.10e-01 100.0% 75.7%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 44.0 3.58e-01 95.1% 31.4%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 42.0 5.07e-01 99.0% 75.7%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 74.0 7.16e-01 100.0% 94.7%
4284118 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 6.07e-01 98.0% 94.7%
3904034 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 45.0 5.79e-01 96.1% 100.0%
3243536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 48.0 5.28e-01 100.0% 76.5%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.77 45.0 5.57e-01 71.6% 92.3%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 71.0 6.05e-01 100.0% 76.6%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 69.0 6.46e-01 100.0% 96.0%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.74 43.0 5.14e-01 88.2% 84.3%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.74 43.0 5.58e-01 73.5% 100.0%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 44.0 5.22e-01 76.5% 87.1%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.73 56.0 6.09e-01 100.0% 96.5%
3511277 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 6.05e-01 97.1% 98.8%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.81e-01 87.3% 88.2%
3221094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 67.0 6.44e-01 100.0% 99.1%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.72 47.0 5.62e-01 98.0% 98.6%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 41.0 4.92e-01 74.5% 84.3%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 42.0 4.55e-01 94.1% 69.4%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.80e-01 86.3% 98.7%
3711384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.09e-01 100.0% 80.0%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 41.0 5.01e-01 100.0% 89.2%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.71 47.0 5.13e-01 81.4% 81.2%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 40.0 4.73e-01 72.5% 81.4%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 41.0 5.24e-01 73.5% 100.0%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 5.19e-01 73.5% 98.3%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 40.0 4.99e-01 95.1% 96.7%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.69 40.0 4.95e-01 98.0% 92.3%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 40.0 4.98e-01 72.5% 92.3%
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 5.06e-01 99.0% 96.9%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 41.0 4.90e-01 77.5% 90.0%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 42.0 3.83e-01 76.5% 47.4%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 48.0 4.84e-01 86.3% 75.0%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 45.0 4.90e-01 97.1% 83.5%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 38.0 4.82e-01 70.6% 96.7%
3937299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 38.0 4.08e-01 70.6% 65.6%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.66 42.0 4.02e-01 79.4% 55.0%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 41.0 5.02e-01 96.1% 100.0%
3176333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.82e-01 99.0% 95.4%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 48.0 4.07e-01 84.3% 48.8%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 45.0 5.10e-01 77.5% 97.3%
5041872 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 44.0 5.00e-01 76.5% 96.0%
5016579 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 36.0 4.08e-01 96.1% 73.4%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.79e-01 79.4% 90.0%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 5.05e-01 77.5% 98.7%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 42.0 4.67e-01 97.1% 88.7%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 3.88e-01 79.4% 54.8%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 44.0 4.74e-01 97.1% 86.7%
5035935 219.1.1.26 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin 0.60 44.0 3.61e-01 77.5% 47.6%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 53.0 4.66e-01 97.1% 95.3%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.63e-01 76.5% 87.8%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 38.0 4.01e-01 95.1% 73.3%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 44.0 3.88e-01 92.2% 54.5%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 45.0 4.67e-01 92.2% 88.4%
4952455 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.58 37.0 3.96e-01 95.1% 74.2%
3995388 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 39.0 3.68e-01 98.0% 60.0%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.54 41.0 3.98e-01 96.1% 72.7%
5040907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.40e-01 88.2% 88.7%
3593477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.04e-01 100.0% 63.0%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.67e-01 99.0% 65.0%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.52 45.0 3.97e-01 95.1% 69.3%
4002498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 39.0 4.09e-01 97.1% 88.4%