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PLM4_65_b1_redo_sep16_scaffold_0_prodigal-single.1__X__X__00390
Bact-VirPLM4_65_b1_redo_sep16_scaffold_0_prodigal-single.1__X__X__00390
Identity
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 607-960
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8a7dC01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.83 | 51.0 | 6.54e-01 | 96.9% | 100.0% |
| 2r1bA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 43.0 | 5.81e-01 | 98.6% | 98.5% |
| 1vavA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 37.0 | 4.67e-01 | 84.5% | 84.2% |
| 3gneB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 39.0 | 4.75e-01 | 74.3% | 86.4% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 37.0 | 4.47e-01 | 83.9% | 88.3% |
| 4ozxA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 41.0 | 4.56e-01 | 84.7% | 83.5% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.59 | 28.0 | 4.04e-01 | 89.3% | 95.2% |
| 4cciA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 36.0 | 4.21e-01 | 84.7% | 89.4% |
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 19.0 | 3.09e-01 | 94.6% | 79.4% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 24.0 | 3.49e-01 | 83.6% | 91.3% |
| 4be3A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 4.28e-01 | 79.7% | 86.9% |
| 5jtwA05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.53 | 17.0 | 2.90e-01 | 91.2% | 80.2% |
| 6kxkB02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 21.0 | 3.33e-01 | 95.2% | 97.0% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 18.0 | 3.14e-01 | 82.2% | 99.1% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.50 | 22.0 | 3.32e-01 | 79.1% | 97.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3557449 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.83 | 53.0 | 6.44e-01 | 99.4% | 94.2% |
| 3914972 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.81 | 43.0 | 6.06e-01 | 98.0% | 99.5% |
| 3626302 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.81 | 52.0 | 6.50e-01 | 98.3% | 100.0% |
| 3586799 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.79 | 45.0 | 5.85e-01 | 98.0% | 93.0% |
| 3910338 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.78 | 38.0 | 5.52e-01 | 75.4% | 97.1% |
| 3501354 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.76 | 54.0 | 6.40e-01 | 99.2% | 100.0% |
| 3389888 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.74 | 33.0 | 4.85e-01 | 91.8% | 89.4% |
| 4019267 | 10.1.1.36 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase | 0.72 | 42.0 | 5.06e-01 | 78.8% | 84.2% |
| 3968513 | 10.1.1.27 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 | 0.69 | 38.0 | 4.75e-01 | 73.4% | 83.9% |
| 3726566 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.65 | 54.0 | 5.85e-01 | 96.0% | 100.0% |
| 3741054 | 10.1.1.3 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin | 0.65 | 42.0 | 4.76e-01 | 99.7% | 82.1% |
| 1069944 | 10.1.1.27 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 | 0.53 | 40.0 | 4.28e-01 | 79.7% | 86.9% |
| 3491868 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 21.0 | 3.31e-01 | 89.0% | 95.6% |
D2
medium
residues 66-121
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5k2mA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 35.0 | 2.94e-01 | 78.6% | 29.2% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 44.0 | 4.00e-01 | 73.2% | 77.2% |
| 2vsoF01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 47.0 | 3.21e-01 | 85.7% | 28.1% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 49.0 | 3.38e-01 | 87.5% | 28.4% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 41.0 | 4.00e-01 | 73.2% | 67.7% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 47.0 | 3.87e-01 | 91.1% | 66.4% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.58 | 43.0 | 3.88e-01 | 82.1% | 58.5% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.57 | 40.0 | 3.92e-01 | 75.0% | 75.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 43.0 | 3.92e-01 | 87.5% | 69.7% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.51 | 37.0 | 3.38e-01 | 83.9% | 85.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972578 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.64 | 50.0 | 4.25e-01 | 89.3% | 75.8% |
| 3264412 | 109.4.1.1554 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TARBP1 | 0.62 | 49.0 | 2.94e-01 | 91.1% | 18.6% |
| 4932665 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.59 | 44.0 | 3.84e-01 | 82.1% | 64.4% |
| 3430711 | 5014.1.1.0 ↗ | extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor | 0.58 | 40.0 | 3.76e-01 | 71.4% | 58.6% |
| 4493280 | 109.4.1.130 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHAT | 0.53 | 43.0 | 3.52e-01 | 96.4% | 87.5% |
D3
medium
residues 122-159_298-388
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dqaA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 52.0 | 4.31e-01 | 89.1% | 99.5% |
D4
medium
residues 160-297
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13385.14 best | Laminin_G_3 | 46.5 | 6.20e-12 | 100.0% | 72.2% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 73.0 | 6.65e-01 | 99.3% | 73.7% |
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 73.0 | 6.55e-01 | 100.0% | 71.6% |
| 8a7dC01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 74.0 | 6.21e-01 | 100.0% | 64.4% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 72.0 | 6.45e-01 | 100.0% | 73.8% |
| 5vxzA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 68.0 | 5.97e-01 | 100.0% | 67.9% |
| 3dgtA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 64.0 | 5.01e-01 | 100.0% | 62.2% |
| 1dhkB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 57.0 | 5.05e-01 | 100.0% | 66.2% |
| 6e20A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 51.0 | 5.26e-01 | 100.0% | 90.2% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 55.0 | 4.63e-01 | 100.0% | 68.6% |
| 1ux6A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 55.0 | 4.78e-01 | 100.0% | 76.4% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 44.0 | 3.62e-01 | 91.3% | 84.9% |
| 5o16B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 45.0 | 3.59e-01 | 92.8% | 78.7% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 43.0 | 3.63e-01 | 89.9% | 72.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3411806 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.80 | 72.0 | 6.24e-01 | 100.0% | 65.5% |
| 3557419 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.79 | 74.0 | 6.49e-01 | 100.0% | 71.1% |
| 3482455 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.77 | 72.0 | 6.14e-01 | 100.0% | 64.8% |
| 2541746 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.76 | 69.0 | 6.10e-01 | 100.0% | 68.6% |
| 4471281 | 10.1.1.89 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 | 0.76 | 64.0 | 5.30e-01 | 100.0% | 52.3% |
| 3580258 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.75 | 71.0 | 6.14e-01 | 100.0% | 71.0% |
| 3389881 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.74 | 69.0 | 5.93e-01 | 100.0% | 67.6% |
| 5046961 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.71 | 59.0 | 5.08e-01 | 100.0% | 56.7% |
| 168847 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.69 | 64.0 | 5.04e-01 | 100.0% | 63.4% |
| 5019985 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.68 | 63.0 | 5.44e-01 | 100.0% | 67.1% |
| 3936801 | 10.1.1.91 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29324 | 0.66 | 61.0 | 4.80e-01 | 100.0% | 58.9% |
| 3928295 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.66 | 58.0 | 5.15e-01 | 100.0% | 67.0% |
| 3580950 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.66 | 61.0 | 4.81e-01 | 100.0% | 51.5% |
| 5012226 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 59.0 | 5.30e-01 | 100.0% | 74.2% |
| 5009919 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.64 | 58.0 | 5.07e-01 | 100.0% | 70.8% |
| 1563554 | 10.1.1.53 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › G7C_C | 0.63 | 51.0 | 4.55e-01 | 100.0% | 61.5% |
| 3509387 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.61 | 47.0 | 4.94e-01 | 100.0% | 93.3% |
| 5033471 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.55 | 34.0 | 3.89e-01 | 82.6% | 81.9% |
| 3213707 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 4.23e-01 | 73.9% | 97.3% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.53 | 37.0 | 3.95e-01 | 81.9% | 84.2% |
| 3427875 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.52 | 36.0 | 3.46e-01 | 70.3% | 99.4% |
| 4014144 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 31.0 | 3.29e-01 | 81.2% | 68.3% |
D5
medium
residues 389-486
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 28.0 | 3.04e-01 | 78.6% | 51.9% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 41.0 | 3.70e-01 | 73.5% | 66.2% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.53 | 38.0 | 3.41e-01 | 74.5% | 66.2% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 30.0 | 3.11e-01 | 90.8% | 57.0% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 29.0 | 3.36e-01 | 76.5% | 76.5% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 37.0 | 3.40e-01 | 74.5% | 67.2% |
| 6le1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 33.0 | 3.73e-01 | 90.8% | 91.2% |
| 5wjpA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.46e-01 | 81.6% | 77.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022351 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.59 | 32.0 | 2.53e-01 | 74.5% | 26.7% |
| 3168448 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.58 | 33.0 | 3.08e-01 | 86.7% | 41.1% |
| 3056435 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 33.0 | 3.27e-01 | 88.8% | 50.0% |
| 5027824 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.57 | 37.0 | 3.93e-01 | 86.7% | 75.3% |
| 5077445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 28.0 | 2.41e-01 | 73.5% | 27.5% |
| 3239600 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 34.0 | 3.87e-01 | 82.7% | 87.1% |
| 4029341 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 34.0 | 3.67e-01 | 87.8% | 72.9% |
| 4933816 | 5069.1.2.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › Nitrate_red_gam | 0.52 | 46.0 | 3.80e-01 | 99.0% | 73.9% |
| 3601834 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.52 | 35.0 | 3.39e-01 | 86.7% | 60.0% |
| 3989794 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.50 | 35.0 | 2.55e-01 | 72.4% | 97.5% |
D6
medium
residues 524-604
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 41.0 | 3.52e-01 | 70.4% | 73.8% |
| 7ylvH01 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.51 | 26.0 | 2.77e-01 | 70.4% | 53.6% |
| 3l24B02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.50 | 39.0 | 2.77e-01 | 84.0% | 29.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3693234 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 33.0 | 3.50e-01 | 71.6% | 56.0% |
| 3482743 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 38.0 | 2.54e-01 | 71.6% | 55.1% |
| 3585493 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 36.0 | 3.02e-01 | 70.4% | 43.6% |
| 3782040 | 101.1.22.0 ↗ | alpha arrays › HTH › HTH › double HTH | 0.50 | 34.0 | 2.99e-01 | 77.8% | 47.8% |
D7
medium
residues 988-1117
Domain cluster:
rep: BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00068__D937-955_1244-1345
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 27.0 | 2.80e-01 | 81.5% | 37.5% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 30.0 | 3.42e-01 | 73.1% | 78.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1197010 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 26.0 | 3.52e-01 | 77.7% | 69.2% |
| 1289873 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.58 | 25.0 | 3.31e-01 | 80.0% | 73.5% |
| 1890038 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.54 | 24.0 | 2.55e-01 | 81.5% | 43.7% |
| 3726663 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 27.0 | 3.40e-01 | 84.6% | 88.0% |
| 3575378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 30.0 | 3.36e-01 | 80.0% | 77.9% |