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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00059
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00059
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3un0A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.64 | 54.0 | 4.78e-01 | 94.6% | 76.1% |
| 4jonC00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.60 | 53.0 | 4.58e-01 | 100.0% | 83.1% |
| 1p49A03 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 49.0 | 4.39e-01 | 97.3% | 77.8% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.56 | 36.0 | 3.46e-01 | 86.5% | 54.7% |
| 5o5cB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 35.0 | 2.99e-01 | 100.0% | 37.5% |
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 41.0 | 3.45e-01 | 79.7% | 88.0% |
| 1kblA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 46.0 | 4.24e-01 | 94.6% | 72.4% |
| 2fe0A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 44.0 | 3.88e-01 | 87.8% | 82.2% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.52 | 38.0 | 3.48e-01 | 90.5% | 58.9% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 44.0 | 2.86e-01 | 100.0% | 24.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3843785 | 292.2.1.10 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N | 0.66 | 51.0 | 4.66e-01 | 100.0% | 63.3% |
| 3825916 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 39.0 | 4.03e-01 | 70.3% | 65.7% |
| 3700615 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.60 | 51.0 | 4.08e-01 | 100.0% | 57.6% |
| 3484299 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 2.95e-01 | 100.0% | 32.6% |
| 3492298 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 48.0 | 2.92e-01 | 100.0% | 30.9% |
| 3787883 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.53 | 43.0 | 2.66e-01 | 90.5% | 92.9% |
| 3621547 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.52 | 35.0 | 3.66e-01 | 70.3% | 100.0% |
| 3733713 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 41.0 | 3.93e-01 | 89.2% | 77.8% |
| 4014568 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.52 | 36.0 | 3.92e-01 | 86.5% | 98.2% |
| 3587406 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.51 | 45.0 | 3.44e-01 | 100.0% | 96.0% |
| None | — | 0.51 | 43.0 | 2.63e-01 | 100.0% | 17.6% |