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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00068
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-72
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.79 | 59.0 | 6.12e-01 | 100.0% | 84.4% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.78 | 62.0 | 6.14e-01 | 100.0% | 82.9% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.77 | 60.0 | 5.89e-01 | 100.0% | 77.0% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 59.0 | 6.03e-01 | 100.0% | 86.6% |
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 60.0 | 5.13e-01 | 100.0% | 59.6% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 56.0 | 5.62e-01 | 100.0% | 86.8% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.07e-01 | 100.0% | 50.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 4.78e-01 | 100.0% | 81.8% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.63e-01 | 100.0% | 82.3% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 44.0 | 4.46e-01 | 98.5% | 80.3% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.33e-01 | 100.0% | 78.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 43.0 | 4.44e-01 | 100.0% | 85.7% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.59 | 44.0 | 3.88e-01 | 100.0% | 53.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 42.0 | 4.27e-01 | 100.0% | 79.7% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.56 | 40.0 | 4.27e-01 | 100.0% | 96.4% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 47.0 | 4.22e-01 | 100.0% | 99.0% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.55 | 35.0 | 4.01e-01 | 89.7% | 91.7% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.55 | 49.0 | 4.47e-01 | 100.0% | 76.7% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 4.23e-01 | 100.0% | 78.7% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.54 | 46.0 | 3.86e-01 | 100.0% | 55.9% |
| 2bzlA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 43.0 | 2.90e-01 | 89.7% | 28.5% |
| 2qcuB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 41.0 | 2.93e-01 | 85.3% | 63.3% |
| 3eb7A03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.53 | 43.0 | 3.21e-01 | 95.6% | 95.4% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 42.0 | 2.82e-01 | 89.7% | 28.0% |
| 5is8A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.52 | 42.0 | 3.07e-01 | 91.2% | 47.2% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.99e-01 | 94.1% | 81.9% |
| 1vw3B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.60e-01 | 85.3% | 91.4% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 3.61e-01 | 97.1% | 76.4% |
| 1foeC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.29e-01 | 95.6% | 59.6% |
| 1dhkB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.21e-01 | 100.0% | 62.6% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 42.0 | 3.90e-01 | 100.0% | 96.8% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 39.0 | 3.40e-01 | 88.2% | 79.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031670 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.82 | 65.0 | 6.88e-01 | 98.5% | 95.0% |
| 4207556 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.80 | 70.0 | 6.96e-01 | 100.0% | 91.4% |
| 3519380 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.73 | 61.0 | 5.81e-01 | 100.0% | 77.5% |
| 3868602 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 61.0 | 5.32e-01 | 100.0% | 62.0% |
| 3171604 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.71 | 60.0 | 5.83e-01 | 100.0% | 82.7% |
| 3510414 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.67 | 55.0 | 5.25e-01 | 98.5% | 76.2% |
| 4981041 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.67 | 45.0 | 5.15e-01 | 94.1% | 96.0% |
| 3423859 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 60.0 | 5.44e-01 | 100.0% | 80.0% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 47.0 | 4.94e-01 | 100.0% | 86.7% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 5.10e-01 | 100.0% | 94.5% |
| 3494860 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 57.0 | 4.82e-01 | 100.0% | 80.0% |
| 3893892 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.64 | 58.0 | 5.49e-01 | 100.0% | 90.0% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.63 | 47.0 | 4.78e-01 | 100.0% | 83.1% |
| 4101580 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.62 | 46.0 | 4.71e-01 | 100.0% | 83.1% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.62 | 46.0 | 4.67e-01 | 100.0% | 83.1% |
| 3575208 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.60 | 37.0 | 2.99e-01 | 94.1% | 31.8% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.59 | 45.0 | 4.58e-01 | 100.0% | 86.2% |
| 4664970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 37.0 | 4.26e-01 | 83.8% | 95.6% |
| 4882787 | 375.1.1.67 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N | 0.58 | 36.0 | 4.09e-01 | 85.3% | 91.5% |
| 4680459 | 375.1.1.67 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N | 0.57 | 36.0 | 4.07e-01 | 83.8% | 95.6% |
| 3266046 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.56 | 37.0 | 3.87e-01 | 91.2% | 75.0% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.56 | 44.0 | 4.32e-01 | 100.0% | 78.7% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 4.07e-01 | 92.6% | 92.0% |
| 4028728 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.55 | 36.0 | 3.90e-01 | 91.2% | 81.8% |
| 4078003 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.55 | 47.0 | 3.89e-01 | 100.0% | 58.5% |
| 4041551 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.55 | 45.0 | 3.81e-01 | 94.1% | 57.5% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 37.0 | 3.18e-01 | 73.5% | 84.2% |
| 3616935 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.54 | 43.0 | 3.33e-01 | 92.6% | 72.4% |
| 4967706 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.53 | 43.0 | 3.55e-01 | 92.6% | 84.3% |
| 3932586 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.53 | 38.0 | 3.04e-01 | 97.1% | 33.7% |
| 5079755 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.53 | 35.0 | 3.78e-01 | 91.2% | 83.6% |
| 4990926 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.53 | 34.0 | 3.83e-01 | 91.2% | 92.0% |
| 3515600 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 3.76e-01 | 75.0% | 84.6% |
| 3181317 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.52 | 34.0 | 3.30e-01 | 94.1% | 58.2% |
| 3631382 | 2003.1.3.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase | 0.52 | 39.0 | 2.65e-01 | 85.3% | 53.0% |
| 3594465 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 35.0 | 3.81e-01 | 89.7% | 87.3% |
| 5029226 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.52 | 34.0 | 3.71e-01 | 89.7% | 83.6% |
| 4945816 | 375.1.1.333 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › jr-ZPR1 | 0.52 | 35.0 | 3.85e-01 | 91.2% | 89.1% |
| 4002601 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 41.0 | 3.20e-01 | 94.1% | 56.5% |
| 4220096 | 2.1.1.48 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C | 0.51 | 33.0 | 3.42e-01 | 72.1% | 70.8% |
| 4436471 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 39.0 | 3.46e-01 | 86.8% | 55.2% |
| 4397221 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 35.0 | 3.62e-01 | 80.9% | 78.5% |
| 4001056 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.51 | 42.0 | 3.75e-01 | 95.6% | 71.0% |
| 3908665 | 4.1.1.227 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B | 0.50 | 39.0 | 3.55e-01 | 100.0% | 62.1% |
| 5044597 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.50 | 32.0 | 3.57e-01 | 85.3% | 88.0% |
| 5073192 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 36.0 | 3.68e-01 | 91.2% | 81.5% |