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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00096

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00096

Identity

Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 235-372
PDB
Domain cluster: rep: IMGVR_UViG_3300031857_004037-3300031857-Ga0315909_100099191__D152-231_272-308
D2 medium residues 37-128
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 48.0 5.19e-01 100.0% 69.6%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 45.0 4.76e-01 97.8% 69.9%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 43.0 4.27e-01 100.0% 57.6%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 41.0 4.84e-01 98.9% 85.9%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 40.0 3.88e-01 100.0% 57.8%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.59e-01 89.1% 72.2%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 39.0 3.72e-01 77.2% 100.0%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 3.04e-01 90.2% 45.2%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 46.0 4.46e-01 98.9% 91.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700209 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 44.0 4.61e-01 97.8% 69.4%
4090194 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 46.0 4.15e-01 100.0% 57.6%
4085451 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 49.0 4.59e-01 100.0% 78.2%
3853596 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.56 34.0 3.05e-01 92.4% 43.1%
3398103 2.1.1.117 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DPOA2_OB 0.55 43.0 3.85e-01 100.0% 60.0%
4066014 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.54 42.0 3.40e-01 97.8% 44.0%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.54 34.0 3.15e-01 91.3% 49.2%
185024 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.52 43.0 3.49e-01 90.2% 90.1%
194032 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 29.0 3.13e-01 90.2% 66.3%
D3 medium residues 129-218
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3agrA02 3.30.420.540 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 42.0 2.90e-01 98.9% 85.7%
D4 medium residues 412-462
PDB
Domain cluster: representative