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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00149

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00149

Identity

Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-83
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04545.23 best Sigma70_r4 44.3 1.40e-11 55.7% 62.0%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 44.0 5.00e-01 70.0% 74.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 43.0 5.08e-01 70.0% 82.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 47.0 4.99e-01 72.9% 73.0%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 42.0 3.95e-01 71.4% 48.8%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.44e-01 75.7% 82.0%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 42.0 4.42e-01 70.0% 64.1%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 46.0 4.47e-01 70.0% 59.7%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 42.0 4.45e-01 70.0% 67.2%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 43.0 4.85e-01 72.9% 79.6%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 41.0 4.69e-01 70.0% 78.8%
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 42.0 4.59e-01 70.0% 73.7%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.45e-01 70.0% 64.2%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 42.0 3.89e-01 72.9% 48.9%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 4.62e-01 75.7% 75.9%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 40.0 4.25e-01 70.0% 65.1%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.37e-01 71.4% 64.7%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.68 48.0 3.77e-01 75.7% 36.6%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.61e-01 70.0% 75.4%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 41.0 4.34e-01 71.4% 69.4%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.60e-01 82.9% 77.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.63e-01 72.9% 45.0%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.25e-01 72.9% 76.2%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 38.0 4.03e-01 70.0% 67.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.18e-01 74.3% 72.6%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.62 54.0 4.22e-01 92.9% 95.0%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.05e-01 75.7% 78.5%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.21e-01 75.7% 80.5%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.05e-01 74.3% 68.5%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.78e-01 75.7% 90.0%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.22e-01 78.6% 93.0%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.27e-01 74.3% 76.5%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.49e-01 78.6% 45.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.34e-01 75.7% 47.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.32e-01 78.6% 86.3%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 40.0 4.11e-01 72.9% 76.1%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.31e-01 70.0% 63.5%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 38.0 3.87e-01 72.9% 70.0%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.54 46.0 4.19e-01 92.9% 79.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.15e-01 77.1% 46.1%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.53 42.0 3.31e-01 100.0% 40.7%
3m66A00 1.25.70.10 Mainly Alpha › Alpha Horseshoe › Transcription termination factor 3, mitochondrial › Transcription termination factor 3, mitochondrial 0.52 41.0 2.81e-01 88.6% 27.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079698 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.77 45.0 4.83e-01 70.0% 68.3%
4987929 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 48.0 5.23e-01 75.7% 75.0%
4998812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 44.0 4.62e-01 70.0% 63.1%
3957509 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.76 44.0 4.77e-01 70.0% 68.3%
3603679 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.76 46.0 3.79e-01 71.4% 35.8%
4926894 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 44.0 4.74e-01 70.0% 68.3%
3511100 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 44.0 4.93e-01 70.0% 74.5%
4931278 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 43.0 4.96e-01 70.0% 77.4%
4975892 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.75 43.0 4.69e-01 70.0% 68.3%
5046761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 43.0 4.69e-01 70.0% 68.3%
5009653 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 48.0 5.00e-01 75.7% 70.8%
5046349 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 44.0 4.60e-01 70.0% 64.6%
5055914 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 43.0 4.80e-01 70.0% 74.5%
3286027 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.74 44.0 4.81e-01 72.9% 71.7%
5034428 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.74 42.0 4.99e-01 70.0% 82.0%
5028930 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 44.0 4.78e-01 72.9% 71.7%
3289544 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.73 44.0 4.62e-01 72.9% 66.2%
4967690 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 44.0 5.22e-01 72.9% 86.0%
3287759 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 44.0 4.64e-01 72.9% 66.2%
4939604 101.1.2.465 ↗ alpha arrays › HTH › HTH › winged helix domain › CdvB_HTH 0.73 43.0 5.10e-01 71.4% 85.7%
5083248 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.73 44.0 4.76e-01 72.9% 71.7%
143506 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 49.0 5.68e-01 74.3% 92.5%
5030878 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 44.0 4.57e-01 72.9% 66.2%
4944981 101.1.2.873 ↗ alpha arrays › HTH › HTH › winged helix domain › AsnC_trans_reg 0.72 44.0 4.91e-01 72.9% 78.2%
4948514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 39.0 4.37e-01 71.4% 67.3%
4977345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 44.0 3.98e-01 71.4% 46.3%
4980059 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.72 43.0 5.14e-01 72.9% 86.0%
5046351 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 44.0 4.21e-01 74.3% 55.0%
5030496 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 43.0 4.70e-01 72.9% 71.7%
4982934 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 44.0 4.75e-01 71.4% 73.3%
5024733 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 43.0 4.52e-01 71.4% 66.2%
5073261 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.71 43.0 4.36e-01 72.9% 61.4%
4612394 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.71 50.0 4.64e-01 74.3% 97.8%
4984317 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 44.0 4.91e-01 72.9% 80.0%
4169823 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 43.0 4.48e-01 72.9% 66.2%
None — 0.71 48.0 4.45e-01 70.0% 62.4%
4966030 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 45.0 4.92e-01 75.7% 79.3%
3279153 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.70 43.0 4.49e-01 71.4% 67.7%
4962267 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.70 48.0 4.39e-01 71.4% 95.6%
5060562 101.1.2.887 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1670 0.70 52.0 4.41e-01 80.0% 87.8%
4009998 101.1.2.299 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1627 0.69 41.0 3.77e-01 70.0% 45.6%
4131842 101.1.3.25 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r3 0.68 46.0 4.54e-01 74.3% 65.3%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.68 52.0 4.39e-01 81.4% 77.4%
4957813 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 43.0 4.48e-01 74.3% 70.8%
4955811 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.66 40.0 3.69e-01 74.3% 46.7%
5036041 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.11e-01 74.3% 67.4%
4927466 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 48.0 4.46e-01 80.0% 98.9%
5000182 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 49.0 4.30e-01 81.4% 86.7%
1674868 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.64 47.0 3.95e-01 75.7% 87.3%
1109319 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.62 49.0 4.59e-01 84.3% 84.9%
4175915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 4.16e-01 74.3% 71.8%
4961377 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.62 45.0 4.59e-01 77.1% 84.3%
4967633 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 43.0 3.96e-01 74.3% 68.9%
None — 0.60 44.0 3.53e-01 75.7% 45.4%
4679149 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.17e-01 81.4% 80.0%
3642010 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.57 41.0 3.73e-01 75.7% 67.4%
4487757 101.1.2.40 ↗ alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.57 42.0 3.20e-01 77.1% 40.0%
4316691 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 32.0 3.41e-01 70.0% 76.7%