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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00164
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-118
Domain cluster:
rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.77 | 69.0 | 6.30e-01 | 100.0% | 76.4% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 46.0 | 3.69e-01 | 76.8% | 37.2% |
| 3wuzA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 46.0 | 3.86e-01 | 75.4% | 55.0% |
| 5f8zA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 47.0 | 4.06e-01 | 79.7% | 88.4% |
| 4fixA01 | 3.90.550.60 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.61 | 44.0 | 2.75e-01 | 76.8% | 14.1% |
| 7tzeA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 3.75e-01 | 75.4% | 65.1% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.61 | 41.0 | 4.13e-01 | 75.4% | 70.6% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.60 | 40.0 | 4.52e-01 | 71.0% | 96.0% |
| 6a6yA00 | 2.60.40.1490 | Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like | 0.60 | 42.0 | 3.24e-01 | 73.9% | 41.4% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 3.79e-01 | 82.6% | 56.8% |
| 2jjuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 3.59e-01 | 73.9% | 57.1% |
| 1jkxA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.58 | 39.0 | 2.82e-01 | 79.7% | 23.0% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 39.0 | 3.43e-01 | 76.8% | 47.1% |
| 8a28A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.26e-01 | 79.7% | 37.3% |
| 6on6A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.47e-01 | 73.9% | 60.2% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 3.25e-01 | 76.8% | 42.3% |
| 3fvcA03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.55 | 41.0 | 3.55e-01 | 79.7% | 94.5% |
| 6grsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.70e-01 | 88.4% | 57.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 39.0 | 3.60e-01 | 75.4% | 57.6% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 39.0 | 3.01e-01 | 76.8% | 32.3% |
| 2dtgE06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.34e-01 | 75.4% | 49.5% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 38.0 | 3.59e-01 | 75.4% | 98.8% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.68e-01 | 88.4% | 92.5% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 39.0 | 3.09e-01 | 78.3% | 43.1% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 36.0 | 3.41e-01 | 73.9% | 58.2% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 45.0 | 4.13e-01 | 100.0% | 84.2% |
| 2blnA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.52 | 38.0 | 2.76e-01 | 78.3% | 35.7% |
| 4x9tA01 | 3.40.190.150 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 | 0.51 | 40.0 | 3.11e-01 | 89.9% | 36.5% |
| 5ylyA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 39.0 | 3.48e-01 | 88.4% | 66.1% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.51 | 38.0 | 3.17e-01 | 82.6% | 49.6% |
| 5deqA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 41.0 | 3.45e-01 | 100.0% | 88.5% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 34.0 | 3.28e-01 | 72.5% | 98.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.78 | 71.0 | 6.63e-01 | 100.0% | 81.2% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.78 | 71.0 | 5.63e-01 | 100.0% | 80.0% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 65.0 | 5.84e-01 | 100.0% | 68.4% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 63.0 | 5.82e-01 | 100.0% | 73.9% |
| 3600913 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.66 | 48.0 | 3.67e-01 | 76.8% | 60.0% |
| 4977431 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 53.0 | 5.41e-01 | 95.7% | 96.9% |
| 5031647 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 44.0 | 4.47e-01 | 75.4% | 74.3% |
| 4982056 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 45.0 | 4.37e-01 | 75.4% | 77.3% |
| 3611980 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 43.0 | 3.55e-01 | 78.3% | 50.0% |
| 3596272 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 39.0 | 2.73e-01 | 100.0% | 20.5% |
| 4238825 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.60 | 43.0 | 3.71e-01 | 76.8% | 57.3% |
| 3692094 | 11.1.1.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 | 0.59 | 41.0 | 3.14e-01 | 75.4% | 54.9% |
| 3915794 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 41.0 | 3.52e-01 | 73.9% | 46.4% |
| 3412082 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.58 | 40.0 | 3.52e-01 | 72.5% | 59.0% |
| 4942866 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 3.78e-01 | 82.6% | 72.4% |
| 2323826 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.56 | 39.0 | 3.75e-01 | 72.5% | 66.7% |
| 3223282 | 223.2.1.22 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin | 0.56 | 40.0 | 3.07e-01 | 76.8% | 100.0% |
| 3539815 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 39.0 | 2.92e-01 | 73.9% | 82.2% |
| 3478066 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.83e-01 | 88.4% | 56.4% |
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.55 | 47.0 | 4.15e-01 | 100.0% | 71.3% |
| 2577567 | 1.1.2.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox | 0.55 | 38.0 | 3.56e-01 | 75.4% | 58.7% |
| 4358359 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.55 | 46.0 | 4.19e-01 | 100.0% | 83.0% |
| 4569355 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 38.0 | 2.34e-01 | 73.9% | 11.5% |
| 3478362 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.16e-01 | 81.2% | 84.0% |
| 3348136 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.53 | 47.0 | 3.99e-01 | 100.0% | 89.6% |
| 4507657 | 10.9.1.3 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C | 0.53 | 41.0 | 3.19e-01 | 88.4% | 94.1% |
| 3164753 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.52 | 44.0 | 4.36e-01 | 100.0% | 96.0% |
| 4468424 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.52 | 44.0 | 4.21e-01 | 100.0% | 84.7% |
| 4517262 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.52 | 43.0 | 4.15e-01 | 100.0% | 88.2% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.52 | 37.0 | 2.41e-01 | 92.8% | 14.9% |
| 3937666 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 2.98e-01 | 89.9% | 36.6% |
| 3571103 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.52 | 43.0 | 3.09e-01 | 94.2% | 70.7% |
| 3992154 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.52 | 35.0 | 3.73e-01 | 72.5% | 85.0% |
| 3611587 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.51 | 35.0 | 2.56e-01 | 71.0% | 61.4% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.50 | 35.0 | 2.96e-01 | 73.9% | 39.2% |
| 5261 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 35.0 | 3.26e-01 | 73.9% | 87.9% |