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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00183
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00183
Identity
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-69
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xlyA00 | 1.20.200.20 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › She2 domain | 0.74 | 65.0 | 4.39e-01 | 100.0% | 42.0% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 53.0 | 5.75e-01 | 98.3% | 97.9% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.71 | 62.0 | 5.52e-01 | 100.0% | 67.8% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.69 | 60.0 | 4.85e-01 | 100.0% | 53.8% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 56.0 | 5.78e-01 | 100.0% | 94.5% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.68 | 50.0 | 4.74e-01 | 100.0% | 66.2% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 58.0 | 5.19e-01 | 98.3% | 80.5% |
| 2oexA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.68 | 59.0 | 4.49e-01 | 100.0% | 79.0% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.67 | 56.0 | 3.74e-01 | 100.0% | 33.3% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.66 | 55.0 | 5.38e-01 | 98.3% | 89.6% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 55.0 | 3.85e-01 | 100.0% | 70.6% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.63 | 43.0 | 4.07e-01 | 74.6% | 59.2% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.61 | 52.0 | 4.87e-01 | 100.0% | 84.2% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.60 | 52.0 | 4.72e-01 | 100.0% | 87.8% |
| 4by6A01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 41.0 | 2.70e-01 | 72.9% | 17.7% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 51.0 | 4.04e-01 | 96.6% | 93.7% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 50.0 | 4.32e-01 | 100.0% | 58.6% |
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.58 | 38.0 | 3.11e-01 | 79.7% | 33.9% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 39.0 | 3.76e-01 | 72.9% | 60.8% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.56 | 42.0 | 3.23e-01 | 84.7% | 32.7% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 38.0 | 3.82e-01 | 74.6% | 96.8% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.54 | 37.0 | 3.30e-01 | 74.6% | 79.1% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.52 | 38.0 | 3.62e-01 | 100.0% | 66.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3491715 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.77 | 68.0 | 6.15e-01 | 98.3% | 78.8% |
| 5078343 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.76 | 59.0 | 5.79e-01 | 100.0% | 78.1% |
| 3875853 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.74 | 64.0 | 4.16e-01 | 98.3% | 21.9% |
| 4364069 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.74 | 63.0 | 4.85e-01 | 91.5% | 72.8% |
| 4460358 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 64.0 | 4.07e-01 | 96.6% | 23.7% |
| 4954045 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.73 | 64.0 | 6.10e-01 | 100.0% | 84.1% |
| 5006607 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.73 | 64.0 | 5.71e-01 | 100.0% | 89.4% |
| 3544521 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.73 | 65.0 | 4.79e-01 | 96.6% | 51.0% |
| 4051716 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.73 | 63.0 | 4.14e-01 | 98.3% | 22.9% |
| 1546111 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.71 | 63.0 | 6.07e-01 | 100.0% | 91.0% |
| 3235853 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.70 | 61.0 | 5.53e-01 | 96.6% | 80.0% |
| 4010637 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.70 | 61.0 | 5.77e-01 | 96.6% | 87.1% |
| 3211383 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.70 | 60.0 | 5.10e-01 | 98.3% | 75.0% |
| 3413983 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.69 | 62.0 | 4.31e-01 | 100.0% | 68.9% |
| 4494528 | 632.2.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 | 0.69 | 53.0 | 5.45e-01 | 100.0% | 92.7% |
| 4946174 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 60.0 | 5.20e-01 | 98.3% | 64.4% |
| 3594826 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.68 | 58.0 | 5.03e-01 | 100.0% | 62.1% |
| 3971056 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.67 | 59.0 | 4.70e-01 | 100.0% | 75.0% |
| 3385184 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.67 | 55.0 | 5.39e-01 | 96.6% | 93.8% |
| 5053994 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 56.0 | 5.26e-01 | 100.0% | 85.3% |
| 3908716 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.66 | 53.0 | 5.01e-01 | 100.0% | 74.7% |
| 4854386 | 6004.1.1.2 ↗ | extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 | 0.65 | 55.0 | 4.64e-01 | 96.6% | 66.7% |
| 4096211 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.64 | 55.0 | 3.75e-01 | 94.9% | 67.6% |
| 3250261 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.63 | 53.0 | 4.70e-01 | 98.3% | 67.8% |
| 3734404 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.62 | 52.0 | 4.81e-01 | 100.0% | 77.5% |
| 3673391 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.62 | 52.0 | 4.80e-01 | 98.3% | 77.5% |
| 3185821 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.61 | 52.0 | 4.87e-01 | 98.3% | 80.0% |
| 3917245 | 632.6.1.6 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_M | 0.61 | 52.0 | 4.93e-01 | 96.6% | 81.4% |
| 3017495 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.60 | 52.0 | 4.24e-01 | 100.0% | 59.1% |
| 4061582 | 632.7.1.32 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_M | 0.60 | 52.0 | 4.82e-01 | 98.3% | 77.3% |
| 5028679 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 48.0 | 4.14e-01 | 96.6% | 70.9% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.59 | 44.0 | 4.32e-01 | 84.7% | 75.4% |
| 4007897 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.58 | 42.0 | 4.07e-01 | 81.4% | 80.0% |
| 4009505 | 7079.1.1.1 ↗ | a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP | 0.58 | 42.0 | 4.08e-01 | 81.4% | 80.0% |
| 3775580 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.58 | 44.0 | 4.13e-01 | 84.7% | 97.3% |
| 3637597 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.58 | 47.0 | 3.29e-01 | 96.6% | 27.1% |
| 2557383 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.57 | 48.0 | 3.93e-01 | 100.0% | 55.3% |
| 3615313 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.56 | 46.0 | 4.24e-01 | 98.3% | 83.7% |