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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00184
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00184
Identity
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-88
Domain cluster:
rep: PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00270__D93-164
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 41.0 | 3.29e-01 | 100.0% | 34.1% |
| 2e5kA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 44.0 | 4.71e-01 | 100.0% | 95.3% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 45.0 | 3.50e-01 | 100.0% | 39.3% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.55 | 45.0 | 3.75e-01 | 91.3% | 50.4% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 38.0 | 3.96e-01 | 88.7% | 83.1% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 2.91e-01 | 86.3% | 42.1% |
| 4gouA02 | 2.30.29.200 | Mainly Beta › Roll › PH-domain like › | 0.54 | 44.0 | 3.63e-01 | 93.8% | 70.3% |
| 2y7bA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 44.0 | 3.79e-01 | 93.8% | 93.3% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.53 | 42.0 | 4.29e-01 | 85.0% | 93.4% |
| 3h0gH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 44.0 | 3.88e-01 | 93.8% | 93.5% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.52 | 36.0 | 3.97e-01 | 98.8% | 95.1% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.73e-01 | 88.7% | 67.3% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 3.56e-01 | 100.0% | 94.4% |
| 1zoyB01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 40.0 | 3.74e-01 | 90.0% | 78.3% |
| 3brnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 44.0 | 3.65e-01 | 100.0% | 62.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3907176 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.73 | 55.0 | 5.28e-01 | 100.0% | 70.0% |
| 3530890 | 2004.1.1.402 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT | 0.69 | 59.0 | 5.71e-01 | 98.8% | 84.1% |
| 3848483 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.69 | 60.0 | 5.64e-01 | 100.0% | 78.6% |
| 4951299 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.65 | 56.0 | 4.65e-01 | 100.0% | 53.1% |
| 3491987 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 45.0 | 5.04e-01 | 72.5% | 100.0% |
| 3256432 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 41.0 | 4.61e-01 | 100.0% | 88.3% |
| 4261760 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.63 | 50.0 | 4.76e-01 | 100.0% | 72.6% |
| 3899494 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 53.0 | 4.58e-01 | 95.0% | 82.3% |
| 3614740 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.63 | 46.0 | 3.85e-01 | 91.3% | 46.9% |
| 3225729 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.63 | 46.0 | 3.91e-01 | 93.8% | 47.7% |
| 3700781 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.62 | 46.0 | 3.83e-01 | 91.3% | 46.9% |
| 3520218 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 50.0 | 4.42e-01 | 95.0% | 94.2% |
| 3291521 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.58 | 46.0 | 3.77e-01 | 86.3% | 56.7% |
| 3707023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 49.0 | 4.62e-01 | 100.0% | 76.0% |
| 4932514 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.58 | 49.0 | 4.36e-01 | 100.0% | 64.2% |
| 3408937 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 37.0 | 3.76e-01 | 87.5% | 66.3% |
| 3657881 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 44.0 | 2.91e-01 | 86.3% | 37.4% |
| 4941424 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.53 | 40.0 | 2.58e-01 | 80.0% | 99.0% |
| 5054413 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.53 | 43.0 | 3.96e-01 | 96.2% | 68.0% |
| 3188325 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.53 | 45.0 | 3.45e-01 | 91.3% | 53.5% |
| 3940319 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 35.0 | 2.33e-01 | 90.0% | 15.9% |
| 5079413 | 5.1.3.272 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP | 0.52 | 43.0 | 2.93e-01 | 88.7% | 34.7% |
| 4983074 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 45.0 | 3.91e-01 | 100.0% | 63.8% |
| 5056765 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 24.0 | 2.81e-01 | 76.2% | 50.9% |
| 4255495 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.52 | 38.0 | 2.68e-01 | 78.8% | 90.4% |
| 5019602 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 43.0 | 3.85e-01 | 97.5% | 92.5% |
| 5027751 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 45.0 | 3.69e-01 | 100.0% | 95.3% |
| 3809268 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.51 | 42.0 | 3.14e-01 | 100.0% | 68.6% |
| 5069515 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.50 | 44.0 | 3.94e-01 | 98.8% | 87.0% |