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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00220

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00220

Identity

Kingdom:
phage

Quality

52.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
D2 medium residues 169-327
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b9wA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.55 47.0 3.63e-01 93.1% 89.5%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.52 32.0 3.76e-01 79.9% 89.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1719256 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.63 54.0 5.12e-01 95.0% 87.2%
3964980 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.53 45.0 4.20e-01 92.5% 92.0%
D3 medium residues 328-441
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 41.0 4.42e-01 78.9% 81.7%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 36.0 4.52e-01 88.6% 100.0%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 39.0 4.33e-01 87.7% 87.4%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 31.0 3.88e-01 77.2% 86.6%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 36.0 4.32e-01 87.7% 98.6%
2ju1A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 35.0 3.83e-01 73.7% 74.7%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 35.0 4.14e-01 88.6% 98.6%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 40.0 4.42e-01 85.1% 95.6%
2mr7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 34.0 3.70e-01 92.1% 73.6%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 33.0 4.00e-01 86.0% 97.1%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 47.0 4.28e-01 100.0% 100.0%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 4.14e-01 87.7% 95.4%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 39.0 3.55e-01 75.4% 82.3%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 47.0 4.02e-01 100.0% 67.9%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 42.0 3.93e-01 89.5% 98.0%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 41.0 3.24e-01 84.2% 83.9%
1r8iA00 1.20.58.430 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Type IV secretion system, VirB5-domain 0.53 43.0 3.70e-01 88.6% 71.7%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 38.0 3.40e-01 73.7% 76.2%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 32.0 3.65e-01 100.0% 87.3%
1bvp101 1.10.250.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 0.51 34.0 3.39e-01 78.9% 64.2%
2mf4A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.51 35.0 4.07e-01 85.1% 100.0%
4hacB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 41.0 3.62e-01 90.4% 93.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.76e-01 88.6% 95.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4500663 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.70 36.0 4.20e-01 79.8% 70.0%
4297555 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.66 35.0 4.04e-01 78.1% 69.4%
3339928 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.63 35.0 3.75e-01 77.2% 61.0%
4345527 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.52 45.0 3.81e-01 99.1% 82.4%
3493341 109.4.1.1530 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_m, COG4_C 0.51 36.0 2.80e-01 71.9% 88.1%
4231760 161.1.1.1 ↗ alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW 0.50 38.0 3.14e-01 79.8% 71.2%