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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00282
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00282
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-83
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 53.0 | 5.81e-01 | 100.0% | 89.1% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.75 | 64.0 | 6.08e-01 | 100.0% | 80.0% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.63 | 38.0 | 3.53e-01 | 82.3% | 47.5% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.62 | 43.0 | 3.94e-01 | 100.0% | 54.8% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 39.0 | 4.44e-01 | 100.0% | 94.3% |
| 3bg3A01 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.62 | 38.0 | 3.54e-01 | 83.5% | 48.5% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 47.0 | 4.58e-01 | 94.9% | 77.0% |
| 1u5kA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 42.0 | 4.19e-01 | 72.2% | 90.2% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.61 | 39.0 | 3.99e-01 | 86.1% | 67.1% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 50.0 | 4.53e-01 | 93.7% | 99.1% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 4.83e-01 | 100.0% | 93.0% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 39.0 | 4.17e-01 | 92.4% | 80.6% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 48.0 | 4.51e-01 | 93.7% | 98.0% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 40.0 | 3.31e-01 | 73.4% | 85.3% |
| 3amuA02 | 2.40.50.1010 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 48.0 | 3.99e-01 | 91.1% | 64.7% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.56 | 46.0 | 4.24e-01 | 92.4% | 96.2% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 4.06e-01 | 94.9% | 80.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 38.0 | 4.20e-01 | 87.3% | 93.4% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 45.0 | 4.07e-01 | 94.9% | 68.7% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 4.09e-01 | 94.9% | 83.5% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.54 | 44.0 | 3.60e-01 | 93.7% | 70.2% |
| 1ia9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 49.0 | 3.92e-01 | 97.5% | 94.5% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.92e-01 | 93.7% | 81.0% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.54 | 37.0 | 3.44e-01 | 72.2% | 96.1% |
| 3zleA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.54 | 28.0 | 3.41e-01 | 86.1% | 89.7% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.67e-01 | 82.3% | 93.4% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 37.0 | 3.44e-01 | 98.7% | 56.1% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 39.0 | 3.53e-01 | 93.7% | 56.6% |
| 4kujA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 47.0 | 3.80e-01 | 100.0% | 77.3% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.52 | 44.0 | 3.80e-01 | 100.0% | 59.1% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.52 | 40.0 | 3.43e-01 | 100.0% | 48.9% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 3.70e-01 | 100.0% | 75.6% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928985 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.74 | 53.0 | 5.08e-01 | 100.0% | 65.6% |
| 4012002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 51.0 | 5.44e-01 | 100.0% | 84.3% |
| 3842362 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.66 | 55.0 | 5.18e-01 | 100.0% | 74.7% |
| 3494860 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 58.0 | 5.11e-01 | 100.0% | 82.6% |
| 4207556 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.64 | 51.0 | 5.33e-01 | 100.0% | 98.6% |
| 3974565 | 3794.1.2.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase | 0.64 | 39.0 | 4.22e-01 | 89.9% | 73.8% |
| 3897512 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 56.0 | 5.65e-01 | 100.0% | 96.2% |
| 3385864 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.62 | 41.0 | 4.55e-01 | 91.1% | 88.3% |
| 4663942 | 3794.1.2.3 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase › PYC_OADA | 0.62 | 37.0 | 3.56e-01 | 81.0% | 52.2% |
| 1409347 | 3794.1.2.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase | 0.61 | 38.0 | 4.05e-01 | 83.5% | 72.1% |
| 4987937 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.61 | 44.0 | 3.83e-01 | 77.2% | 90.4% |
| 5077089 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 45.0 | 4.71e-01 | 93.7% | 90.0% |
| 5078358 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.61 | 43.0 | 3.82e-01 | 75.9% | 90.8% |
| 4505786 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.60 | 42.0 | 3.67e-01 | 73.4% | 56.9% |
| 160843 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 50.0 | 4.33e-01 | 93.7% | 85.8% |
| 3387114 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.60 | 42.0 | 3.99e-01 | 73.4% | 75.8% |
| 3176702 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.60 | 51.0 | 4.12e-01 | 100.0% | 48.4% |
| 3226744 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 54.0 | 5.19e-01 | 100.0% | 91.1% |
| 5061930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 4.49e-01 | 93.7% | 73.7% |
| 4427420 | 4.1.1.436 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29249 | 0.58 | 48.0 | 4.78e-01 | 100.0% | 88.7% |
| 3659150 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 48.0 | 4.31e-01 | 93.7% | 97.4% |
| 3246931 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.57 | 43.0 | 3.68e-01 | 81.0% | 82.3% |
| 3555102 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 47.0 | 4.21e-01 | 94.9% | 96.7% |
| 4434271 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.57 | 40.0 | 3.47e-01 | 73.4% | 56.8% |
| 5054047 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 43.0 | 4.46e-01 | 96.2% | 86.7% |
| 3271779 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 46.0 | 3.88e-01 | 93.7% | 68.3% |
| 3764969 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 46.0 | 4.27e-01 | 93.7% | 90.4% |
| 3533362 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.56 | 47.0 | 3.76e-01 | 96.2% | 53.9% |
| 5053759 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 3.95e-01 | 93.7% | 67.7% |
| 3582821 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.55 | 45.0 | 4.33e-01 | 94.9% | 80.0% |
| 4937908 | 220.1.1.87 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 | 0.55 | 44.0 | 3.65e-01 | 96.2% | 47.1% |
| 3836701 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.55 | 45.0 | 3.78e-01 | 94.9% | 58.8% |
| 3744190 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.55 | 46.0 | 4.04e-01 | 96.2% | 62.5% |
| 3786286 | 220.1.1.154 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 | 0.54 | 45.0 | 3.63e-01 | 96.2% | 68.8% |
| 3560565 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.54 | 45.0 | 3.40e-01 | 97.5% | 36.7% |
| 4785457 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.54 | 38.0 | 2.60e-01 | 77.2% | 95.7% |
| 3956013 | 881.1.1.14 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3515 | 0.53 | 41.0 | 3.58e-01 | 86.1% | 96.9% |
| 5063609 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 44.0 | 4.03e-01 | 94.9% | 69.4% |
| 5031433 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 43.0 | 4.05e-01 | 93.7% | 75.0% |
| 4999914 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 47.0 | 3.98e-01 | 100.0% | 62.3% |
| 3702466 | 220.1.1.80 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N | 0.52 | 42.0 | 3.78e-01 | 93.7% | 63.3% |
| 4650682 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 45.0 | 3.84e-01 | 100.0% | 59.2% |
| 4983074 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.51 | 46.0 | 3.90e-01 | 100.0% | 62.3% |
| 3784770 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 41.0 | 4.26e-01 | 100.0% | 93.3% |
| 3274216 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.51 | 41.0 | 3.54e-01 | 93.7% | 71.9% |
| 5058724 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.51 | 44.0 | 3.82e-01 | 100.0% | 61.6% |