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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00285

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00285

Identity

Kingdom:
phage

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 37.0 4.14e-01 94.0% 69.8%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 36.0 3.41e-01 89.3% 44.9%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 37.0 2.55e-01 94.0% 19.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.27e-01 98.8% 89.4%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 48.0 4.05e-01 98.8% 65.2%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.05e-01 96.4% 70.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.74e-01 97.6% 63.3%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 46.0 3.89e-01 98.8% 69.5%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 3.25e-01 78.6% 78.4%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.87e-01 96.4% 73.6%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.97e-01 98.8% 70.2%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.74e-01 98.8% 68.2%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.01e-01 75.0% 50.0%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 38.0 2.55e-01 95.2% 20.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3355345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 40.0 4.32e-01 77.4% 68.6%
4507137 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 40.0 2.42e-01 96.4% 10.3%
3504703 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 47.0 4.53e-01 96.4% 70.5%
3933099 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.62 38.0 3.79e-01 96.4% 60.0%
3925468 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 42.0 3.97e-01 95.2% 59.0%
4029641 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 40.0 2.63e-01 97.6% 18.5%
4676174 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 45.0 3.65e-01 85.7% 93.1%
3724449 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 40.0 3.98e-01 97.6% 72.2%
3517509 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 43.0 3.92e-01 96.4% 64.5%
4022122 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 43.0 2.76e-01 95.2% 18.3%
4865157 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.52 40.0 3.63e-01 100.0% 59.5%
4976921 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 36.0 2.47e-01 96.4% 18.2%
3286088 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 45.0 4.02e-01 96.4% 77.5%
3690324 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 44.0 3.77e-01 96.4% 75.7%
3978573 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.52 44.0 4.14e-01 95.2% 93.3%
3970009 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 46.0 3.66e-01 98.8% 64.5%
3262206 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.52 37.0 3.03e-01 76.2% 55.0%
3277627 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 43.0 3.93e-01 94.0% 71.3%
4464528 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 43.0 3.97e-01 98.8% 72.5%
3517508 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 39.0 3.78e-01 95.2% 73.7%
D2 medium residues 85-173
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 50.0 5.92e-01 97.8% 88.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 47.0 5.33e-01 97.8% 84.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 47.0 5.46e-01 97.8% 90.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.21e-01 97.8% 88.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 4.85e-01 97.8% 83.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.67 47.0 3.58e-01 100.0% 32.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.44e-01 98.9% 73.8%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 44.0 4.32e-01 71.9% 87.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.53e-01 96.6% 81.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.78e-01 79.8% 87.5%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.30e-01 98.9% 68.5%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 45.0 3.08e-01 76.4% 28.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.29e-01 100.0% 77.9%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.38e-01 83.1% 67.5%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 45.0 2.98e-01 83.1% 96.9%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 46.0 3.33e-01 84.3% 82.2%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.41e-01 100.0% 73.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 51.0 4.29e-01 93.3% 82.3%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.12e-01 87.6% 80.6%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 51.0 4.33e-01 100.0% 91.3%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.45e-01 100.0% 75.9%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.45e-01 100.0% 87.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.88e-01 78.7% 87.7%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.38e-01 93.3% 82.6%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 34.0 3.91e-01 89.9% 84.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.72e-01 100.0% 71.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 44.0 3.77e-01 100.0% 53.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 44.0 3.77e-01 100.0% 53.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.55 48.0 3.52e-01 100.0% 97.6%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 34.0 3.95e-01 88.8% 93.2%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 40.0 3.45e-01 77.5% 93.0%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 40.0 2.81e-01 79.8% 71.8%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 46.0 3.82e-01 100.0% 57.0%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 45.0 3.76e-01 100.0% 72.3%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 26.0 3.46e-01 94.4% 95.5%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 46.0 4.00e-01 100.0% 84.9%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.31e-01 100.0% 64.7%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 3.59e-01 100.0% 64.6%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.59e-01 100.0% 78.8%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.35e-01 100.0% 67.8%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 44.0 3.90e-01 97.8% 98.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 51.0 5.86e-01 98.9% 89.2%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 50.0 5.81e-01 98.9% 89.2%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 49.0 5.70e-01 98.9% 87.7%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 49.0 5.62e-01 97.8% 86.2%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 49.0 5.64e-01 98.9% 87.7%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 48.0 5.49e-01 97.8% 86.2%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 48.0 5.54e-01 100.0% 89.2%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 47.0 5.34e-01 97.8% 86.2%
5053223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 3.87e-01 97.8% 40.0%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.02e-01 100.0% 81.2%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 45.0 4.49e-01 100.0% 66.7%
4497599 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.67 41.0 3.95e-01 93.3% 52.4%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 45.0 4.06e-01 75.3% 52.5%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 43.0 4.13e-01 100.0% 62.0%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 41.0 4.68e-01 98.9% 92.3%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.08e-01 97.8% 94.6%
3552777 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 50.0 2.95e-01 88.8% 64.7%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 41.0 4.36e-01 100.0% 81.2%
3722885 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.59 45.0 2.92e-01 83.1% 68.8%
5021454 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.59 53.0 4.15e-01 100.0% 87.4%
5073672 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.59 53.0 4.18e-01 100.0% 89.7%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 40.0 3.84e-01 100.0% 60.0%
3204722 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.58 46.0 3.07e-01 87.6% 83.3%
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.57 52.0 4.45e-01 100.0% 97.1%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.57 41.0 3.73e-01 100.0% 55.6%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.57 35.0 4.11e-01 70.8% 93.2%
4023201 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 44.0 3.05e-01 84.3% 54.7%
3647716 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.54 47.0 3.97e-01 100.0% 90.6%
3531262 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 40.0 2.77e-01 79.8% 67.5%
3935930 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 44.0 3.44e-01 95.5% 97.2%
3270561 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 40.0 2.84e-01 82.0% 71.0%
3405718 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 46.0 3.42e-01 100.0% 98.4%
4030358 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 42.0 3.07e-01 88.8% 96.2%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.52 44.0 3.34e-01 100.0% 35.9%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.52 45.0 3.62e-01 97.8% 94.4%
3744571 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 42.0 3.36e-01 94.4% 98.5%
3177460 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.50 44.0 4.25e-01 97.8% 92.0%
3642858 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.50 43.0 3.08e-01 96.6% 39.3%
5033471 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.50 44.0 4.18e-01 100.0% 96.2%