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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00301
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00301
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-82
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 56.0 | 4.35e-01 | 96.1% | 53.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.62 | 46.0 | 3.87e-01 | 77.9% | 82.4% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.62 | 30.0 | 2.27e-01 | 97.4% | 18.8% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.60 | 43.0 | 3.73e-01 | 76.6% | 51.2% |
| 3kyhC01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.60 | 42.0 | 2.94e-01 | 74.0% | 69.2% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.59 | 28.0 | 3.12e-01 | 88.3% | 52.5% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 42.0 | 3.36e-01 | 76.6% | 57.9% |
| 3pquA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 50.0 | 3.82e-01 | 100.0% | 59.9% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.56 | 44.0 | 3.18e-01 | 88.3% | 64.3% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.56 | 48.0 | 3.69e-01 | 100.0% | 81.1% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 45.0 | 4.01e-01 | 88.3% | 69.7% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.55 | 47.0 | 3.32e-01 | 97.4% | 51.6% |
| 2x7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 47.0 | 3.79e-01 | 100.0% | 68.6% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 42.0 | 3.46e-01 | 98.7% | 46.4% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 38.0 | 3.75e-01 | 92.2% | 70.7% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 48.0 | 3.03e-01 | 100.0% | 22.3% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 41.0 | 3.37e-01 | 85.7% | 51.4% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.69e-01 | 98.7% | 76.3% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.52 | 43.0 | 3.72e-01 | 93.5% | 77.6% |
| 1iicA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.52e-01 | 98.7% | 69.4% |
| 4my0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.70e-01 | 98.7% | 75.5% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 44.0 | 3.56e-01 | 94.8% | 92.1% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 44.0 | 3.45e-01 | 100.0% | 66.7% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 3.49e-01 | 94.8% | 61.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.51 | 33.0 | 3.65e-01 | 88.3% | 89.5% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.12e-01 | 83.1% | 58.2% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 42.0 | 2.93e-01 | 94.8% | 61.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.50 | 40.0 | 2.94e-01 | 90.9% | 94.6% |
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 42.0 | 3.36e-01 | 94.8% | 58.5% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974213 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.73 | 67.0 | 4.91e-01 | 100.0% | 40.5% |
| 3938521 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.67 | 50.0 | 3.17e-01 | 79.2% | 23.6% |
| 3728191 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 47.0 | 3.58e-01 | 80.5% | 32.6% |
| 3929718 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.64 | 48.0 | 2.97e-01 | 100.0% | 13.9% |
| 3929989 | 330.16.1.2 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP | 0.63 | 55.0 | 5.42e-01 | 100.0% | 91.8% |
| 5048918 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 44.0 | 3.77e-01 | 74.0% | 75.8% |
| 3658408 | 4325.1.1.13 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 | 0.62 | 45.0 | 4.59e-01 | 77.9% | 88.0% |
| 3462608 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 53.0 | 3.27e-01 | 100.0% | 80.4% |
| 3938634 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.61 | 53.0 | 3.33e-01 | 100.0% | 89.2% |
| 3994028 | 5.1.3.205 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_RIC1_2nd | 0.61 | 55.0 | 3.13e-01 | 100.0% | 10.1% |
| 3393619 | 284.4.1.2 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 | 0.60 | 36.0 | 4.13e-01 | 85.7% | 88.0% |
| 3939294 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 53.0 | 3.36e-01 | 98.7% | 35.3% |
| 4272597 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.59 | 52.0 | 4.32e-01 | 100.0% | 57.9% |
| 3563672 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 52.0 | 4.34e-01 | 100.0% | 62.9% |
| None | — | 0.59 | 54.0 | 3.01e-01 | 100.0% | 11.3% | |
| 3752179 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.59 | 52.0 | 4.42e-01 | 100.0% | 67.7% |
| 3253518 | 5.1.4.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 | 0.59 | 53.0 | 3.36e-01 | 98.7% | 42.2% |
| 3886357 | 5.1.4.47 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N | 0.58 | 48.0 | 3.07e-01 | 89.6% | 24.9% |
| 4024062 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 44.0 | 4.51e-01 | 80.5% | 93.2% |
| 3743583 | 109.21.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 | 0.58 | 42.0 | 2.60e-01 | 84.4% | 13.4% |
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.57 | 49.0 | 4.75e-01 | 100.0% | 91.1% |
| 3402269 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.57 | 45.0 | 4.03e-01 | 85.7% | 67.3% |
| 4241274 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 39.0 | 2.47e-01 | 93.5% | 12.9% |
| 3724794 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 51.0 | 3.10e-01 | 100.0% | 24.5% |
| 3834903 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 46.0 | 4.27e-01 | 89.6% | 75.0% |
| 4600806 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 46.0 | 4.11e-01 | 89.6% | 68.2% |
| 4635289 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 45.0 | 2.94e-01 | 92.2% | 35.4% |
| 3472858 | 145.1.1.32 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 | 0.55 | 31.0 | 3.23e-01 | 98.7% | 56.2% |
| 3515632 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 35.0 | 3.09e-01 | 76.6% | 40.8% |
| 3917937 | 220.1.1.173 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK | 0.55 | 48.0 | 4.25e-01 | 98.7% | 87.8% |
| 3593394 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 43.0 | 3.67e-01 | 85.7% | 56.2% |
| 4024475 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 41.0 | 4.13e-01 | 80.5% | 90.0% |
| 4947171 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 40.0 | 3.69e-01 | 79.2% | 67.6% |
| 5039070 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 42.0 | 3.68e-01 | 84.4% | 61.7% |
| 1553365 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 43.0 | 4.28e-01 | 85.7% | 92.5% |
| 5050547 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.54 | 43.0 | 3.78e-01 | 85.7% | 66.1% |
| 4990259 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.54 | 40.0 | 3.43e-01 | 80.5% | 55.4% |
| 5067682 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.89e-01 | 80.5% | 80.0% |
| 4987352 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 47.0 | 3.82e-01 | 100.0% | 68.6% |
| 3618372 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.54 | 45.0 | 3.95e-01 | 96.1% | 94.2% |
| 3389684 | 5.1.4.47 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N | 0.53 | 49.0 | 3.13e-01 | 100.0% | 25.7% |
| 5052635 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 48.0 | 3.51e-01 | 100.0% | 60.5% |
| 4666185 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 42.0 | 2.71e-01 | 88.3% | 37.6% |
| 3508261 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.53 | 41.0 | 2.85e-01 | 80.5% | 52.0% |
| 4856335 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.53 | 42.0 | 3.38e-01 | 85.7% | 48.0% |
| 3741335 | 109.4.1.338 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 | 0.53 | 38.0 | 2.55e-01 | 75.3% | 52.5% |
| 4954852 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 36.0 | 2.81e-01 | 71.4% | 53.8% |
| 1553111 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.53 | 41.0 | 3.30e-01 | 85.7% | 46.5% |
| 4396101 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 42.0 | 2.71e-01 | 92.2% | 40.0% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.52 | 44.0 | 3.19e-01 | 94.8% | 44.8% |
| 1829221 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.52 | 42.0 | 3.38e-01 | 89.6% | 49.7% |
| 3490957 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 35.0 | 3.59e-01 | 87.0% | 73.3% |
| 3480268 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 39.0 | 3.26e-01 | 100.0% | 46.9% |
| 3704620 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 43.0 | 3.31e-01 | 100.0% | 76.2% |
| 3939569 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 36.0 | 3.52e-01 | 83.1% | 65.9% |
| 3707269 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 43.0 | 3.07e-01 | 92.2% | 69.6% |
| 5050618 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 36.0 | 3.02e-01 | 74.0% | 42.9% |
| 3621385 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.51 | 44.0 | 2.79e-01 | 100.0% | 28.1% |
| 3579667 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.51 | 44.0 | 3.72e-01 | 98.7% | 69.6% |
| 3609391 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.51 | 41.0 | 2.77e-01 | 96.1% | 45.1% |
| 4101594 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.50 | 43.0 | 3.78e-01 | 98.7% | 94.2% |