←Back to structures
PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00303
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00303
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00471__D2-65
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 43.0 | 4.63e-01 | 95.9% | 83.9% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.63 | 45.0 | 3.81e-01 | 91.9% | 45.2% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 45.0 | 3.88e-01 | 93.2% | 50.9% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.61 | 38.0 | 3.70e-01 | 90.5% | 56.8% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 44.0 | 3.58e-01 | 95.9% | 41.9% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.58 | 47.0 | 4.58e-01 | 90.5% | 98.8% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 45.0 | 4.16e-01 | 85.1% | 79.4% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 40.0 | 3.56e-01 | 91.9% | 50.5% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.55 | 45.0 | 3.52e-01 | 93.2% | 40.7% |
| 4a4aA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 36.0 | 3.05e-01 | 90.5% | 37.8% |
| 2itmA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 44.0 | 3.13e-01 | 90.5% | 93.4% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.71e-01 | 97.3% | 60.2% |
| 2jdaB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 38.0 | 3.15e-01 | 90.5% | 38.7% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.82e-01 | 94.6% | 58.6% |
| 3ifrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 44.0 | 3.10e-01 | 89.2% | 95.8% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 35.0 | 2.95e-01 | 91.9% | 38.0% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 36.0 | 2.79e-01 | 70.3% | 57.5% |
| 5c50B00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.54 | 45.0 | 3.43e-01 | 94.6% | 45.9% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 34.0 | 2.90e-01 | 90.5% | 38.5% |
| 1hw5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 34.0 | 2.88e-01 | 90.5% | 37.2% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 35.0 | 2.86e-01 | 89.2% | 33.8% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.30e-01 | 91.9% | 52.9% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 44.0 | 3.42e-01 | 100.0% | 42.3% |
| 4clcA00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.52 | 37.0 | 2.91e-01 | 74.3% | 75.7% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 33.0 | 2.83e-01 | 90.5% | 35.8% |
| 4jqrA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.51 | 39.0 | 2.88e-01 | 93.2% | 28.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4473508 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.72 | 52.0 | 5.52e-01 | 86.5% | 90.5% |
| 4491860 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.69 | 50.0 | 5.34e-01 | 85.1% | 90.5% |
| 4939112 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 45.0 | 3.92e-01 | 90.5% | 46.4% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 50.0 | 5.45e-01 | 90.5% | 100.0% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.64 | 49.0 | 4.56e-01 | 93.2% | 65.3% |
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.63 | 49.0 | 4.49e-01 | 93.2% | 64.2% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.63 | 48.0 | 4.62e-01 | 93.2% | 71.8% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 48.0 | 4.55e-01 | 93.2% | 68.9% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.62 | 48.0 | 4.57e-01 | 93.2% | 68.9% |
| 4958730 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 43.0 | 3.79e-01 | 90.5% | 51.4% |
| 3738953 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.60 | 43.0 | 3.60e-01 | 93.2% | 44.8% |
| 3694201 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.57 | 46.0 | 3.77e-01 | 87.8% | 78.5% |
| 4028489 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 40.0 | 3.38e-01 | 91.9% | 43.1% |
| 4459672 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.56 | 49.0 | 3.94e-01 | 100.0% | 99.3% |
| 3287544 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.54 | 45.0 | 3.13e-01 | 95.9% | 70.5% |
| 3397499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.86e-01 | 95.9% | 56.9% |
| 5041794 | 206.1.3.40 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD | 0.54 | 47.0 | 3.19e-01 | 100.0% | 99.0% |
| 3205720 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 3.84e-01 | 97.3% | 52.6% |
| 5000173 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.53 | 46.0 | 3.23e-01 | 100.0% | 99.2% |
| 4027336 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.53 | 47.0 | 3.46e-01 | 97.3% | 96.9% |
| 5056414 | 11.18.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in metallo-endopeptidase BACOVA_00663 › N-terminal domain in metallo-endopeptidase BACOVA_00663 | 0.53 | 45.0 | 3.71e-01 | 91.9% | 55.4% |
| 3931050 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.52 | 38.0 | 3.36e-01 | 90.5% | 52.7% |
| 4337308 | 10.37.1.0 ↗ | beta sandwiches › jelly-roll › TerD › TerD | 0.51 | 42.0 | 3.35e-01 | 95.9% | 69.2% |
| 3203256 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 43.0 | 2.72e-01 | 95.9% | 48.7% |
| 3915206 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 42.0 | 3.20e-01 | 91.9% | 46.3% |
| 3821996 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.51 | 44.0 | 2.88e-01 | 97.3% | 32.0% |
| 3167512 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.50 | 37.0 | 2.90e-01 | 78.4% | 92.0% |
| 4941899 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.50 | 40.0 | 3.85e-01 | 87.8% | 87.1% |