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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00317
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00317
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-120
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.72 | 65.0 | 5.72e-01 | 100.0% | 90.6% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 57.0 | 5.53e-01 | 100.0% | 76.3% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 60.0 | 5.32e-01 | 100.0% | 63.3% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 62.0 | 5.49e-01 | 100.0% | 89.1% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.69 | 41.0 | 4.45e-01 | 70.6% | 70.6% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.67 | 60.0 | 5.19e-01 | 100.0% | 83.1% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 61.0 | 4.82e-01 | 100.0% | 69.6% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 42.0 | 4.52e-01 | 88.2% | 74.4% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 36.0 | 4.18e-01 | 74.5% | 75.7% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.63 | 40.0 | 4.26e-01 | 70.6% | 73.0% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 39.0 | 4.08e-01 | 74.5% | 67.0% |
| 1qa7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 48.0 | 4.68e-01 | 98.0% | 74.5% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 46.0 | 4.92e-01 | 81.4% | 88.6% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.61 | 54.0 | 4.61e-01 | 99.0% | 71.7% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 43.0 | 4.75e-01 | 86.3% | 92.7% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.59 | 45.0 | 3.27e-01 | 79.4% | 61.9% |
| 1u7lA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 4.33e-01 | 81.4% | 81.1% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.57 | 44.0 | 4.34e-01 | 84.3% | 78.3% |
| 5heeA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.57 | 41.0 | 3.12e-01 | 76.5% | 96.9% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.56 | 45.0 | 3.63e-01 | 88.2% | 88.6% |
| 2w8eA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.56 | 45.0 | 3.61e-01 | 87.3% | 87.2% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.55 | 47.0 | 4.36e-01 | 93.1% | 89.1% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 42.0 | 4.40e-01 | 100.0% | 88.4% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.55 | 47.0 | 4.55e-01 | 96.1% | 91.6% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.38e-01 | 84.3% | 92.9% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.55 | 44.0 | 3.56e-01 | 88.2% | 88.6% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 42.0 | 4.03e-01 | 89.2% | 70.4% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.28e-01 | 84.3% | 91.9% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.54 | 34.0 | 3.94e-01 | 70.6% | 98.4% |
| 5w7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 3.80e-01 | 94.1% | 75.3% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.95e-01 | 80.4% | 75.2% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.53 | 38.0 | 3.60e-01 | 75.5% | 93.5% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.52 | 47.0 | 3.26e-01 | 100.0% | 49.7% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.99e-01 | 84.3% | 95.5% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.59e-01 | 74.5% | 73.7% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.52 | 44.0 | 4.04e-01 | 96.1% | 90.4% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 4.10e-01 | 84.3% | 94.9% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.45e-01 | 74.5% | 64.3% |
| 2wy3B00 | 2.60.40.1990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.40e-01 | 76.5% | 64.2% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.91e-01 | 84.3% | 86.2% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.90e-01 | 83.3% | 93.5% |
| 3blcA00 | 2.70.98.90 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 42.0 | 3.11e-01 | 100.0% | 33.6% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932197 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.76 | 41.0 | 4.86e-01 | 72.5% | 77.1% |
| 3382243 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 39.0 | 5.18e-01 | 70.6% | 100.0% |
| 3678575 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.73 | 39.0 | 5.20e-01 | 70.6% | 98.2% |
| 4966429 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.73 | 41.0 | 4.88e-01 | 73.5% | 81.4% |
| 3264744 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 65.0 | 5.36e-01 | 100.0% | 82.3% |
| 3330441 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.69 | 41.0 | 4.72e-01 | 74.5% | 80.0% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.69 | 58.0 | 5.99e-01 | 97.1% | 97.9% |
| 3456962 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.69 | 47.0 | 5.13e-01 | 83.3% | 84.5% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 62.0 | 5.73e-01 | 100.0% | 96.9% |
| 3807253 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.69 | 45.0 | 5.03e-01 | 81.4% | 85.0% |
| 4349207 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 57.0 | 5.04e-01 | 100.0% | 62.4% |
| 3302370 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 46.0 | 5.06e-01 | 100.0% | 85.5% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.68 | 61.0 | 5.22e-01 | 100.0% | 82.3% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.67 | 61.0 | 5.24e-01 | 100.0% | 83.1% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 61.0 | 5.25e-01 | 100.0% | 85.6% |
| 3941988 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 59.0 | 5.69e-01 | 97.1% | 98.3% |
| 3820702 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 42.0 | 4.79e-01 | 74.5% | 85.3% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.66 | 59.0 | 5.15e-01 | 100.0% | 91.9% |
| 4954551 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 59.0 | 5.40e-01 | 100.0% | 89.6% |
| 3365317 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 43.0 | 4.81e-01 | 80.4% | 85.0% |
| 3425342 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 40.0 | 4.57e-01 | 73.5% | 82.7% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 55.0 | 5.68e-01 | 96.1% | 96.8% |
| 4990691 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.66 | 41.0 | 4.37e-01 | 71.6% | 71.1% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.65 | 53.0 | 5.53e-01 | 96.1% | 98.9% |
| 4613881 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.65 | 41.0 | 4.38e-01 | 71.6% | 72.7% |
| 4952909 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 53.0 | 5.34e-01 | 100.0% | 86.7% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 50.0 | 4.88e-01 | 100.0% | 73.9% |
| 3638041 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.65 | 41.0 | 4.36e-01 | 100.0% | 72.2% |
| 4120122 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.65 | 42.0 | 4.45e-01 | 72.5% | 74.4% |
| 4440255 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.65 | 42.0 | 4.46e-01 | 72.5% | 75.3% |
| 4223798 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.65 | 40.0 | 4.30e-01 | 71.6% | 71.1% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.64 | 46.0 | 4.78e-01 | 84.3% | 80.0% |
| 4154211 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.64 | 42.0 | 4.52e-01 | 74.5% | 76.7% |
| 3250019 | 1.1.5.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Dicty_CAD | 0.64 | 54.0 | 5.50e-01 | 100.0% | 97.0% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 57.0 | 5.61e-01 | 100.0% | 100.0% |
| 4048556 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.63 | 40.0 | 4.30e-01 | 74.5% | 73.3% |
| 3948852 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.63 | 42.0 | 4.49e-01 | 75.5% | 77.8% |
| 4599086 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 37.0 | 3.98e-01 | 79.4% | 68.5% |
| 4991207 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.62 | 41.0 | 4.33e-01 | 72.5% | 75.6% |
| 4574671 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.62 | 42.0 | 4.49e-01 | 75.5% | 80.0% |
| 4041855 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 37.0 | 3.79e-01 | 78.4% | 61.6% |
| 4929139 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.61 | 41.0 | 4.40e-01 | 74.5% | 78.9% |
| 4594531 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 37.0 | 3.92e-01 | 79.4% | 68.5% |
| 4540169 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.59 | 36.0 | 3.95e-01 | 80.4% | 72.9% |
| 3384789 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.58 | 48.0 | 4.75e-01 | 100.0% | 81.8% |
| 176932 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 46.0 | 3.71e-01 | 84.3% | 51.3% |
| 5029881 | 310.3.1.26 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HVO_2525_N | 0.58 | 52.0 | 4.63e-01 | 99.0% | 91.0% |
| 4419286 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 44.0 | 4.57e-01 | 84.3% | 88.2% |
| 4810019 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.57 | 48.0 | 4.71e-01 | 93.1% | 90.9% |
| 4964695 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.57 | 44.0 | 4.08e-01 | 90.2% | 64.8% |
| 3274004 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.43e-01 | 84.3% | 93.3% |
| 3994685 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.56 | 45.0 | 3.43e-01 | 88.2% | 76.0% |
| 142721 | 872.1.1.2 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin | 0.55 | 36.0 | 4.08e-01 | 71.6% | 94.4% |
| 5007485 | 304.165.1.4 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N | 0.55 | 49.0 | 4.38e-01 | 99.0% | 84.1% |
| 3937461 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.52 | 37.0 | 3.67e-01 | 75.5% | 69.1% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.52 | 44.0 | 4.07e-01 | 96.1% | 92.5% |
| 3232202 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.63e-01 | 85.3% | 92.9% |
| 3506640 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 39.0 | 3.65e-01 | 84.3% | 78.5% |