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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00343

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00343

Identity

Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-76
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c0tA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.78 45.0 3.05e-01 86.7% 17.9%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 61.0 5.90e-01 98.3% 85.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 3.70e-01 71.7% 81.9%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 45.0 3.11e-01 81.7% 95.2%
1w36B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 2.71e-01 80.0% 15.4%
5bu6A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.59 44.0 2.91e-01 80.0% 49.2%
3vusB00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.58 43.0 2.85e-01 80.0% 48.0%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 46.0 4.33e-01 93.3% 96.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 40.0 3.28e-01 75.0% 78.9%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.33e-01 88.3% 38.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.65e-01 96.7% 67.7%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.53 32.0 3.12e-01 76.7% 54.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 40.0 3.32e-01 81.7% 59.4%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.52 40.0 3.79e-01 83.3% 76.1%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 40.0 3.06e-01 91.7% 64.0%
2fuqA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.50 44.0 2.79e-01 100.0% 24.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992532 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 57.0 5.76e-01 90.0% 81.7%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 41.0 3.31e-01 70.0% 100.0%
3430287 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.59 42.0 2.65e-01 95.0% 14.8%
3669809 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.58 37.0 2.91e-01 93.3% 32.0%
3399337 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 32.0 3.47e-01 93.3% 66.7%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.56 42.0 4.02e-01 80.0% 94.3%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 42.0 3.44e-01 81.7% 57.3%
4998596 2003.1.5.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.55 39.0 2.47e-01 90.0% 14.5%
338970 4964.1.1.3 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › N4_RNAP_helical 0.55 42.0 2.72e-01 88.3% 51.9%
4959095 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 32.0 3.60e-01 71.7% 82.5%
3227441 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.53 42.0 4.20e-01 85.0% 93.3%
3624263 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 44.0 2.70e-01 91.7% 30.1%
3936047 3153.1.1.0 ↗ a+b two layers › PipX › PipX › PipX 0.53 39.0 3.96e-01 83.3% 83.3%
3645888 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.53 36.0 2.58e-01 83.3% 23.8%
4116848 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 45.0 2.71e-01 98.3% 18.3%
3483375 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.27e-01 70.0% 69.3%
4260212 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.51 46.0 3.55e-01 100.0% 86.2%
3402929 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 31.0 3.18e-01 96.7% 63.6%