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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00346

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00346

Identity

Kingdom:
phage

Quality

95.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00730.32 best HhH-GPD 39.9 6.60e-10 77.0% 50.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ngnA00 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.90 87.0 8.46e-01 100.0% 95.8%
1keaA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.90 70.0 7.62e-01 79.3% 100.0%
1ornA01 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.89 69.0 7.56e-01 79.3% 100.0%
1kg2A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.85 66.0 7.17e-01 80.0% 100.0%
2h56A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.83 60.0 6.55e-01 74.1% 100.0%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.83 64.0 6.89e-01 79.3% 100.0%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.82 64.0 6.64e-01 80.0% 100.0%
1pu6A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.81 63.0 6.61e-01 80.7% 100.0%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.80 57.0 6.01e-01 73.3% 100.0%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.57 40.0 4.14e-01 71.9% 94.4%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3805405 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.93 87.0 8.31e-01 95.6% 86.7%
3659164 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.91 87.0 7.59e-01 99.3% 73.0%
151232 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.90 87.0 8.44e-01 100.0% 95.2%
3891212 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.90 86.0 8.39e-01 100.0% 94.5%
3728475 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.89 83.0 6.72e-01 97.0% 80.3%
4012199 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.86 82.0 6.69e-01 99.3% 80.0%
5062011 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.86 69.0 7.19e-01 83.0% 94.4%
4997835 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.85 74.0 6.22e-01 90.4% 78.1%
4928995 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.85 75.0 6.18e-01 91.9% 75.5%
3187468 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.84 69.0 6.57e-01 84.4% 83.7%
4016158 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.84 74.0 5.73e-01 91.9% 68.4%
4179240 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.84 75.0 6.27e-01 93.3% 76.3%
3190500 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.84 74.0 5.78e-01 91.9% 73.5%
3603606 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.84 75.0 6.23e-01 94.1% 74.1%
3597356 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.84 73.0 5.96e-01 91.1% 77.4%
5016871 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.84 75.0 6.09e-01 93.3% 73.9%
4290764 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.83 74.0 5.94e-01 92.6% 67.5%
4963672 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 75.0 5.83e-01 93.3% 81.5%
4317211 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.83 74.0 6.33e-01 93.3% 79.5%
4963640 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 74.0 6.07e-01 92.6% 72.4%
5022704 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 75.0 6.40e-01 94.8% 76.1%
3950310 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.83 75.0 6.07e-01 93.3% 70.9%
4667269 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 75.0 6.24e-01 94.8% 75.0%
5045783 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 75.0 6.28e-01 94.8% 76.3%
3172419 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.83 73.0 5.43e-01 92.6% 76.1%
3387611 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.83 72.0 6.16e-01 91.1% 79.0%
4984110 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 75.0 6.18e-01 95.6% 78.7%
3177413 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.83 73.0 5.54e-01 92.6% 81.9%
5078090 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 71.0 5.98e-01 90.4% 79.9%
4346154 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.82 73.0 6.20e-01 93.3% 77.6%
3336511 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.82 74.0 6.02e-01 94.1% 76.8%
3617253 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.82 73.0 6.16e-01 93.3% 76.5%
5033046 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 75.0 6.26e-01 95.6% 77.7%
4029571 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.82 73.0 5.92e-01 93.3% 70.6%
48277 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.82 74.0 6.21e-01 94.1% 78.2%
5027521 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 75.0 6.29e-01 96.3% 77.2%
5030409 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.82 73.0 6.26e-01 93.3% 81.0%
3988104 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 74.0 6.27e-01 94.8% 78.0%
3024 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 74.0 6.16e-01 94.8% 74.8%
3886729 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.81 72.0 5.64e-01 93.3% 67.9%
3680219 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 64.0 6.40e-01 80.7% 100.0%
5021819 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 73.0 6.08e-01 94.8% 76.3%
5001108 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 73.0 6.06e-01 94.8% 76.8%
4965013 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 72.0 5.97e-01 94.1% 72.9%
4041358 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.81 75.0 6.22e-01 97.8% 75.3%
4928164 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 73.0 6.23e-01 94.8% 79.0%
3556114 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 73.0 5.58e-01 94.8% 63.2%
4930650 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 75.0 5.97e-01 97.8% 85.2%
3746829 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.81 73.0 5.68e-01 94.8% 66.8%
4468492 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.81 72.0 6.07e-01 93.3% 74.8%
5024097 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 73.0 6.01e-01 94.8% 73.8%
5044357 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.81 73.0 6.24e-01 95.6% 79.0%
4872867 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.80 72.0 6.38e-01 94.1% 87.6%
3954155 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.80 73.0 5.93e-01 95.6% 72.3%
3950282 102.1.2.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S 0.80 72.0 6.07e-01 94.8% 79.1%
4943211 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 71.0 5.95e-01 92.6% 74.4%
5075943 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 73.0 6.20e-01 95.6% 77.9%
4014467 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 72.0 5.44e-01 94.8% 69.2%
4024123 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 72.0 5.53e-01 94.8% 68.0%
3471733 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 72.0 5.63e-01 95.6% 65.6%
4880447 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.80 71.0 5.91e-01 94.1% 76.6%
3179363 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 71.0 5.43e-01 94.1% 68.4%
4964826 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 74.0 6.26e-01 97.8% 76.7%
4287219 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.80 72.0 5.92e-01 94.8% 72.9%
4998466 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.80 71.0 5.92e-01 94.1% 76.8%
5036201 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.95e-01 94.8% 78.6%
3739101 102.1.2.12 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.79 71.0 5.41e-01 94.1% 66.7%
5048400 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 72.0 5.91e-01 94.8% 74.2%
3285594 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.79 74.0 6.22e-01 99.3% 82.7%
3963490 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.89e-01 94.8% 75.6%
4951119 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.86e-01 95.6% 72.2%
4937886 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.82e-01 94.8% 73.5%
3250834 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.65e-01 95.6% 69.4%
3306673 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 70.0 5.65e-01 94.1% 73.9%
3695740 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 70.0 5.59e-01 94.1% 71.2%
5018320 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 5.77e-01 95.6% 81.1%
5032883 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 70.0 5.79e-01 94.8% 80.0%
1558902 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 70.0 5.63e-01 94.1% 72.7%
4195460 102.1.2.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD 0.78 70.0 5.81e-01 94.8% 73.8%
3331963 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 70.0 5.22e-01 94.1% 68.6%
4934680 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 70.0 5.86e-01 95.6% 82.3%
2875755 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 71.0 5.72e-01 95.6% 70.9%
5010691 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.78 70.0 5.71e-01 95.6% 74.9%
4943409 102.1.2.17 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH 0.77 70.0 5.94e-01 95.6% 76.6%
4032194 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.77 70.0 5.91e-01 95.6% 80.5%
4950713 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.77 70.0 5.77e-01 95.6% 76.4%
5026004 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.76 70.0 5.88e-01 97.8% 74.0%
4994571 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.76 70.0 5.83e-01 97.8% 76.6%
4957426 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 66.0 5.76e-01 94.8% 81.5%
3029 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 70.0 5.88e-01 100.0% 80.6%
3388172 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.75 70.0 5.80e-01 100.0% 76.4%
4996550 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.71 62.0 5.65e-01 91.9% 94.1%