←Back to structures
PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00349
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00349
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-190
Domain cluster:
rep: MN047793.1__QDJ96517.1__Xoosp13_331__00331__D1-23_196-312
D2
high
residues 194-246
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3exmA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.60 | 41.0 | 2.79e-01 | 71.7% | 65.1% |
| 2bmoA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.58 | 47.0 | 2.97e-01 | 92.5% | 57.8% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.57 | 42.0 | 3.18e-01 | 83.0% | 77.2% |
| 4jfcA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.57 | 43.0 | 2.96e-01 | 84.9% | 79.1% |
| 3amuA02 | 2.40.50.1010 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 37.0 | 2.83e-01 | 100.0% | 27.2% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 40.0 | 3.37e-01 | 81.1% | 79.8% |
| 2hivA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 46.0 | 3.11e-01 | 100.0% | 28.2% |
| 1vl5C00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 2.89e-01 | 92.5% | 96.7% |
| 4c2mA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.52 | 38.0 | 3.36e-01 | 77.4% | 81.8% |
| 5ijaA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.52 | 35.0 | 2.71e-01 | 71.7% | 41.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4182456 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.60 | 42.0 | 3.64e-01 | 75.5% | 83.5% |
| 5009325 | 2003.1.1.50 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF364 | 0.59 | 40.0 | 3.03e-01 | 94.3% | 26.4% |
| 3420030 | 3755.3.1.304 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Nup54 | 0.57 | 39.0 | 2.85e-01 | 71.7% | 29.3% |
| 6778 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.57 | 42.0 | 3.18e-01 | 83.0% | 77.2% |
| 3319977 | 3939.1.1.162 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Nup54 | 0.56 | 38.0 | 2.74e-01 | 71.7% | 26.1% |
| 3817620 | 192.8.1.37 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Nup54 | 0.55 | 38.0 | 2.71e-01 | 71.7% | 26.1% |
| 3789521 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.53 | 44.0 | 2.85e-01 | 100.0% | 87.7% |
| 3631275 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.53 | 36.0 | 2.64e-01 | 73.6% | 66.7% |
| 3778002 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.50 | 35.0 | 3.13e-01 | 77.4% | 69.4% |