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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00355

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00355

Identity

Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-66
PDB
Domain cluster: rep: NC_048077.1__YP_009813577.1__HOU32_gp132__00132__D78-129
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 51.0 5.17e-01 100.0% 71.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.57e-01 100.0% 90.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 53.0 5.57e-01 91.8% 85.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.79e-01 100.0% 85.9%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.08e-01 70.5% 73.8%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.40e-01 100.0% 70.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 47.0 4.59e-01 91.8% 80.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 40.0 4.14e-01 96.7% 78.6%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 4.02e-01 95.1% 72.5%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 4.28e-01 95.1% 81.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.15e-01 95.1% 88.5%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 46.0 3.04e-01 100.0% 78.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 4.06e-01 96.7% 84.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 4.06e-01 96.7% 82.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.21e-01 100.0% 90.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.88e-01 100.0% 92.7%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 3.83e-01 96.7% 70.3%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 4.03e-01 96.7% 86.3%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 2.99e-01 93.4% 71.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 38.0 3.88e-01 96.7% 78.0%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 46.0 3.65e-01 95.1% 91.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 2.75e-01 88.5% 91.8%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 37.0 3.96e-01 96.7% 84.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.73e-01 96.7% 96.7%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.05e-01 98.4% 53.2%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.03e-01 95.1% 76.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 46.0 3.72e-01 100.0% 63.6%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 35.0 3.76e-01 95.1% 86.3%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.54e-01 96.7% 80.0%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.30e-01 96.7% 62.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 44.0 4.19e-01 95.1% 95.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.89e-01 95.1% 85.0%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 41.0 3.88e-01 91.8% 97.4%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 41.0 4.00e-01 93.4% 100.0%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 38.0 3.14e-01 88.5% 43.7%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 44.0 3.43e-01 100.0% 72.3%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 41.0 4.23e-01 93.4% 100.0%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 43.0 2.89e-01 98.4% 69.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228213 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.84 55.0 5.38e-01 98.4% 63.1%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 52.0 4.43e-01 100.0% 43.2%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 52.0 5.39e-01 100.0% 70.7%
3584335 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 45.0 5.47e-01 96.7% 100.0%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.76 52.0 4.55e-01 100.0% 48.9%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 51.0 5.37e-01 100.0% 78.2%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.73 56.0 5.17e-01 100.0% 65.3%
3931602 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 51.0 4.91e-01 80.3% 67.1%
4031199 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.70 60.0 5.54e-01 100.0% 75.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 57.0 5.52e-01 98.4% 81.4%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.69 49.0 5.08e-01 96.7% 83.6%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.69 44.0 4.75e-01 100.0% 80.0%
4079201 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 48.0 3.95e-01 80.3% 83.6%
1411292 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 54.0 4.25e-01 91.8% 85.5%
4985754 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 45.0 3.95e-01 75.4% 100.0%
4411951 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 47.0 3.66e-01 80.3% 66.7%
4443040 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 50.0 4.21e-01 86.9% 76.9%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.99e-01 91.8% 63.3%
4103327 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 51.0 4.03e-01 95.1% 82.1%
4049072 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.59 52.0 4.21e-01 95.1% 91.8%
4371403 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 48.0 3.93e-01 90.2% 90.9%
3587789 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 50.0 4.20e-01 95.1% 78.1%
3478713 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 47.0 3.92e-01 95.1% 67.5%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.58 44.0 4.70e-01 100.0% 100.0%
3243549 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.58 46.0 3.41e-01 88.5% 56.4%
3165957 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.57 51.0 4.72e-01 96.7% 78.7%
4962316 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 45.0 3.60e-01 88.5% 80.0%
3970949 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 48.0 3.89e-01 91.8% 73.9%
4966092 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 49.0 3.83e-01 93.4% 75.0%
4417109 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.57 48.0 4.02e-01 93.4% 81.0%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.57 46.0 3.79e-01 95.1% 59.7%
4380962 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 48.0 4.03e-01 95.1% 83.8%
5081103 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 47.0 3.76e-01 93.4% 77.6%
3842596 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.85e-01 91.8% 95.6%
4281449 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.56 46.0 3.67e-01 91.8% 85.9%
4073602 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 47.0 3.86e-01 93.4% 80.9%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.04e-01 95.1% 93.7%
4311691 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 48.0 3.68e-01 95.1% 82.2%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.00e-01 100.0% 83.5%
4373021 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.56 46.0 3.93e-01 91.8% 82.8%
4967263 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 47.0 3.84e-01 93.4% 77.3%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.20e-01 100.0% 86.4%
4235194 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 47.0 3.69e-01 93.4% 74.4%
3474441 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.55 42.0 3.49e-01 82.0% 56.7%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.18e-01 100.0% 95.6%
3725179 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 46.0 2.75e-01 93.4% 76.7%
3742641 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.54 46.0 3.88e-01 100.0% 76.4%
4165211 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 45.0 3.44e-01 93.4% 83.4%
3399366 9.14.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 0.53 48.0 3.66e-01 100.0% 81.4%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.53 44.0 3.74e-01 100.0% 86.1%
3733247 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 48.0 3.09e-01 98.4% 40.8%
4116579 2003.1.2.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.52 45.0 2.71e-01 95.1% 37.9%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 47.0 4.51e-01 98.4% 91.4%
4289288 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 46.0 3.56e-01 96.7% 79.7%
3737927 220.1.1.294 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.52 46.0 3.79e-01 98.4% 60.0%
4029169 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 42.0 2.43e-01 100.0% 9.7%
5039759 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 41.0 3.87e-01 88.5% 72.0%
3695871 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.56e-01 96.7% 15.5%
4015135 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 45.0 2.89e-01 98.4% 47.6%