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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00396
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00396
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-79
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ko2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 47.0 | 3.29e-01 | 98.5% | 22.6% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.64 | 55.0 | 4.06e-01 | 98.5% | 51.4% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.63 | 47.0 | 3.26e-01 | 98.5% | 23.3% |
| 1w96C04 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 48.0 | 3.28e-01 | 84.8% | 24.6% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.62 | 54.0 | 3.99e-01 | 100.0% | 50.0% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.61 | 43.0 | 2.97e-01 | 75.8% | 85.5% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.61 | 43.0 | 2.97e-01 | 75.8% | 84.9% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.60 | 42.0 | 3.35e-01 | 75.8% | 64.0% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 44.0 | 3.08e-01 | 98.5% | 23.0% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 43.0 | 3.03e-01 | 98.5% | 23.3% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 53.0 | 3.81e-01 | 100.0% | 83.7% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 52.0 | 4.27e-01 | 100.0% | 98.3% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 45.0 | 3.22e-01 | 87.9% | 29.0% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 50.0 | 3.85e-01 | 100.0% | 96.2% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.58 | 48.0 | 3.71e-01 | 100.0% | 77.2% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 50.0 | 4.05e-01 | 100.0% | 74.1% |
| 4gm6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 39.0 | 2.59e-01 | 74.2% | 55.3% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.56 | 47.0 | 3.00e-01 | 100.0% | 32.8% |
| 4qiwB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.56 | 47.0 | 3.63e-01 | 100.0% | 87.7% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 47.0 | 4.02e-01 | 100.0% | 57.9% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 44.0 | 3.58e-01 | 100.0% | 44.1% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 43.0 | 3.61e-01 | 97.0% | 90.6% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.52 | 42.0 | 3.41e-01 | 98.5% | 68.8% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.52 | 43.0 | 3.49e-01 | 100.0% | 45.6% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 41.0 | 3.42e-01 | 90.9% | 96.8% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 30.0 | 3.35e-01 | 89.4% | 80.0% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 40.0 | 2.82e-01 | 93.9% | 70.1% |
| 4ye4H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.53e-01 | 98.5% | 83.3% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.79e-01 | 100.0% | 63.7% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.50 | 43.0 | 3.33e-01 | 98.5% | 80.0% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 42.0 | 2.87e-01 | 95.5% | 87.5% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 38.0 | 2.94e-01 | 86.4% | 34.1% |
| 3i2nA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 45.0 | 2.84e-01 | 100.0% | 91.3% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 29.0 | 3.29e-01 | 77.3% | 82.2% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.50 | 42.0 | 3.46e-01 | 100.0% | 97.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946465 | 5.1.4.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WG_beta_rep | 0.71 | 50.0 | 3.04e-01 | 74.2% | 13.5% |
| 3704834 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.70 | 49.0 | 4.39e-01 | 100.0% | 51.6% |
| 5074458 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.65 | 44.0 | 3.32e-01 | 71.2% | 100.0% |
| 4303954 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.65 | 58.0 | 3.60e-01 | 100.0% | 95.8% |
| 4191047 | 2484.1.1.245 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA | 0.64 | 57.0 | 3.52e-01 | 100.0% | 96.1% |
| 3408695 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.64 | 57.0 | 5.03e-01 | 100.0% | 78.9% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.64 | 55.0 | 3.44e-01 | 98.5% | 95.1% |
| 4032204 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.64 | 55.0 | 3.43e-01 | 98.5% | 95.3% |
| 4275354 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.60 | 53.0 | 4.07e-01 | 100.0% | 98.7% |
| 4592182 | 331.3.1.8 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 | 0.59 | 44.0 | 4.01e-01 | 87.9% | 57.9% |
| 4443623 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.59 | 51.0 | 3.41e-01 | 100.0% | 94.3% |
| 4886249 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.58 | 47.0 | 4.82e-01 | 100.0% | 95.4% |
| 3937046 | 9.2.1.5 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 | 0.57 | 49.0 | 4.20e-01 | 95.5% | 97.1% |
| 3251871 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.54 | 48.0 | 3.02e-01 | 100.0% | 34.6% |
| 4054953 | 331.3.1.8 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 | 0.54 | 40.0 | 3.34e-01 | 81.8% | 52.3% |
| 5082956 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 45.0 | 3.60e-01 | 100.0% | 44.0% |
| 3209160 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.54 | 44.0 | 3.24e-01 | 92.4% | 96.3% |
| 4399119 | 331.3.1.8 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 | 0.54 | 42.0 | 3.55e-01 | 87.9% | 61.7% |
| 3580330 | 3519.1.1.0 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain | 0.53 | 40.0 | 3.52e-01 | 81.8% | 62.0% |
| 3669367 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 42.0 | 2.67e-01 | 86.4% | 94.0% |
| 4507935 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.53 | 36.0 | 3.06e-01 | 74.2% | 61.8% |
| 3987555 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.53 | 44.0 | 3.04e-01 | 89.4% | 92.2% |
| 4948951 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 44.0 | 3.75e-01 | 100.0% | 75.0% |
| 3520970 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 44.0 | 3.12e-01 | 92.4% | 89.2% |
| 3970675 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 43.0 | 3.13e-01 | 92.4% | 94.4% |
| 3514681 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.51 | 40.0 | 4.21e-01 | 87.9% | 96.7% |
| 3611119 | 719.1.1.4 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N | 0.51 | 40.0 | 3.31e-01 | 90.9% | 96.3% |
| 3486812 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.51 | 40.0 | 3.20e-01 | 90.9% | 89.0% |
| 4950145 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.51 | 42.0 | 3.54e-01 | 97.0% | 78.2% |
| 4950140 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.51 | 43.0 | 3.58e-01 | 93.9% | 70.4% |
| 4859328 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.51 | 40.0 | 3.26e-01 | 90.9% | 49.3% |
| 3372466 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 3.81e-01 | 100.0% | 77.3% |
| 3561230 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 44.0 | 4.31e-01 | 100.0% | 89.3% |
| 1954221 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.51 | 37.0 | 3.61e-01 | 95.5% | 69.3% |
| 134473 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.50 | 42.0 | 2.87e-01 | 95.5% | 87.5% |
| 2323730 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.50 | 41.0 | 3.51e-01 | 100.0% | 79.0% |