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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00444
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00444
Identity
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-59
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 77.0 | 6.76e-01 | 100.0% | 70.6% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.85 | 77.0 | 4.92e-01 | 100.0% | 22.9% |
| 3rvyA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 60.0 | 4.84e-01 | 76.3% | 41.1% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 68.0 | 6.94e-01 | 93.2% | 94.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 64.0 | 6.72e-01 | 89.8% | 98.1% |
| 3lnrA00 | 1.20.120.1530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.79 | 55.0 | 3.92e-01 | 76.3% | 26.9% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 67.0 | 5.73e-01 | 100.0% | 61.1% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 59.0 | 6.26e-01 | 93.2% | 100.0% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 61.0 | 5.33e-01 | 96.6% | 62.6% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 54.0 | 5.01e-01 | 79.7% | 71.2% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 60.0 | 4.54e-01 | 100.0% | 71.7% |
| 3pwfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 52.0 | 4.00e-01 | 81.4% | 37.4% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.68 | 47.0 | 5.20e-01 | 93.2% | 91.3% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 50.0 | 4.31e-01 | 79.7% | 50.5% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 55.0 | 5.13e-01 | 86.4% | 84.5% |
| 3x0uB01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.68 | 60.0 | 3.97e-01 | 100.0% | 26.3% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.68 | 59.0 | 5.52e-01 | 100.0% | 93.2% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 58.0 | 4.41e-01 | 100.0% | 40.1% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 51.0 | 5.39e-01 | 81.4% | 94.2% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.67 | 50.0 | 5.28e-01 | 88.1% | 88.5% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 53.0 | 4.45e-01 | 88.1% | 51.4% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.67 | 53.0 | 4.57e-01 | 86.4% | 58.2% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 54.0 | 5.24e-01 | 86.4% | 79.7% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.67 | 54.0 | 3.75e-01 | 94.9% | 34.8% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 4.94e-01 | 86.4% | 87.7% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 52.0 | 3.98e-01 | 88.1% | 40.4% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.65 | 57.0 | 4.43e-01 | 98.3% | 49.6% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 58.0 | 4.30e-01 | 100.0% | 75.3% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 48.0 | 4.92e-01 | 86.4% | 82.8% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 52.0 | 4.54e-01 | 98.3% | 60.0% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.64 | 45.0 | 3.77e-01 | 86.4% | 41.9% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.63 | 54.0 | 5.25e-01 | 100.0% | 92.6% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.63 | 49.0 | 4.27e-01 | 86.4% | 55.6% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.63 | 49.0 | 4.58e-01 | 86.4% | 69.0% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.62 | 45.0 | 4.28e-01 | 81.4% | 63.5% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 55.0 | 5.11e-01 | 100.0% | 82.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 50.0 | 4.75e-01 | 100.0% | 75.7% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.62 | 44.0 | 4.43e-01 | 78.0% | 74.6% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 53.0 | 4.20e-01 | 100.0% | 86.3% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.61 | 52.0 | 4.98e-01 | 100.0% | 98.6% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 54.0 | 5.31e-01 | 98.3% | 96.8% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 54.0 | 5.17e-01 | 100.0% | 95.5% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 53.0 | 4.90e-01 | 98.3% | 80.0% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 53.0 | 4.78e-01 | 100.0% | 90.1% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.59 | 47.0 | 4.36e-01 | 88.1% | 75.0% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.57 | 48.0 | 3.67e-01 | 93.2% | 47.1% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 50.0 | 4.01e-01 | 100.0% | 49.6% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.57 | 50.0 | 4.77e-01 | 100.0% | 98.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941824 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.83 | 74.0 | 4.64e-01 | 100.0% | 36.6% |
| 4540106 | 3396.1.1.3 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 | 0.82 | 72.0 | 6.56e-01 | 100.0% | 77.5% |
| 4547274 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.82 | 71.0 | 5.92e-01 | 100.0% | 57.0% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.79 | 70.0 | 6.78e-01 | 100.0% | 98.5% |
| 3260436 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.79 | 69.0 | 4.37e-01 | 100.0% | 36.9% |
| 2622460 | 3396.1.1.1 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N | 0.77 | 68.0 | 6.47e-01 | 100.0% | 87.1% |
| 3965106 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.74 | 64.0 | 5.99e-01 | 100.0% | 98.7% |
| 3685214 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.73 | 63.0 | 5.59e-01 | 98.3% | 67.1% |
| 5050536 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 55.0 | 5.25e-01 | 81.4% | 70.0% |
| 3410541 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.72 | 60.0 | 3.79e-01 | 100.0% | 17.4% |
| 3657908 | 3826.1.1.18 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › TMEM135_C_rich | 0.71 | 63.0 | 4.40e-01 | 100.0% | 47.7% |
| 3487203 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.71 | 52.0 | 4.59e-01 | 81.4% | 54.1% |
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 60.0 | 5.73e-01 | 100.0% | 95.7% |
| 3588971 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.68 | 57.0 | 5.36e-01 | 100.0% | 80.0% |
| 3627873 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 54.0 | 5.01e-01 | 86.4% | 72.0% |
| 3514275 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.68 | 59.0 | 5.04e-01 | 100.0% | 60.0% |
| 3296414 | 192.29.1.168 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 | 0.67 | 58.0 | 5.46e-01 | 94.9% | 91.4% |
| 3802185 | 192.8.1.359 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 | 0.66 | 53.0 | 5.05e-01 | 86.4% | 75.7% |
| 3560750 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.66 | 58.0 | 5.48e-01 | 96.6% | 91.4% |
| 3544884 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.65 | 55.0 | 4.13e-01 | 96.6% | 37.3% |
| 3871041 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.63 | 57.0 | 3.81e-01 | 100.0% | 92.9% |
| 3336677 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.63 | 56.0 | 5.16e-01 | 98.3% | 86.7% |
| 5044025 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.63 | 54.0 | 4.76e-01 | 93.2% | 82.4% |
| 3387239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 56.0 | 4.43e-01 | 100.0% | 50.0% |
| 4012407 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 52.0 | 5.20e-01 | 100.0% | 100.0% |
| 4993195 | 632.6.1.15 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 | 0.62 | 55.0 | 4.68e-01 | 98.3% | 73.7% |
| 3240117 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.62 | 56.0 | 4.84e-01 | 100.0% | 81.1% |
| 3963355 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 56.0 | 5.18e-01 | 100.0% | 78.7% |
| 4992964 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 54.0 | 5.10e-01 | 96.6% | 90.0% |
| 3699098 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 54.0 | 4.85e-01 | 98.3% | 96.2% |
| 4674 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.60 | 53.0 | 5.14e-01 | 98.3% | 96.9% |
| 4945931 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 53.0 | 5.06e-01 | 98.3% | 90.0% |
| 2890670 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.59 | 50.0 | 3.76e-01 | 93.2% | 58.3% |
| 4175967 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.56 | 46.0 | 4.09e-01 | 91.5% | 98.8% |