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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00457
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00457
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-104
Domain cluster:
rep: IMGVR_UViG_3300025458_000424-3300025458-Ga0209559_100090112__D25-130
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bdlA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.84 | 80.0 | 6.72e-01 | 100.0% | 68.8% |
| 5ygbA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.83 | 78.0 | 6.98e-01 | 100.0% | 98.5% |
| 4qmgA02 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.82 | 76.0 | 6.63e-01 | 100.0% | 68.1% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.77 | 73.0 | 6.11e-01 | 100.0% | 69.2% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 34.0 | 4.23e-01 | 83.0% | 67.2% |
| 3ntkB01 | 2.40.50.790 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.76 | 61.0 | 6.51e-01 | 96.0% | 98.8% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 49.0 | 5.48e-01 | 81.0% | 97.4% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 30.0 | 3.76e-01 | 85.0% | 69.4% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 40.0 | 3.79e-01 | 85.0% | 55.3% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 46.0 | 4.38e-01 | 84.0% | 75.0% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.58 | 37.0 | 3.47e-01 | 93.0% | 52.9% |
| 4dxkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 44.0 | 4.15e-01 | 98.0% | 68.0% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 45.0 | 4.37e-01 | 98.0% | 79.3% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 26.0 | 3.25e-01 | 89.0% | 71.7% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 38.0 | 3.76e-01 | 71.0% | 100.0% |
| 3lxuX02 | 2.20.25.690 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 34.0 | 3.90e-01 | 99.0% | 94.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3393302 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.86 | 80.0 | 7.71e-01 | 100.0% | 89.1% |
| 3194464 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.86 | 82.0 | 6.72e-01 | 100.0% | 67.3% |
| 3965688 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.86 | 78.0 | 6.90e-01 | 100.0% | 70.4% |
| 3997935 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.86 | 78.0 | 7.66e-01 | 100.0% | 90.5% |
| 3738104 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.85 | 81.0 | 6.65e-01 | 100.0% | 68.5% |
| 3397365 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.85 | 78.0 | 7.36e-01 | 100.0% | 83.5% |
| 3844246 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.84 | 78.0 | 7.44e-01 | 100.0% | 85.2% |
| 3402597 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.84 | 76.0 | 7.17e-01 | 100.0% | 82.6% |
| 3547082 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.84 | 78.0 | 7.52e-01 | 100.0% | 89.1% |
| 3785400 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.83 | 75.0 | 6.67e-01 | 100.0% | 70.4% |
| 3621734 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.83 | 78.0 | 7.28e-01 | 100.0% | 83.3% |
| 3995180 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.83 | 77.0 | 5.97e-01 | 100.0% | 53.7% |
| 3856441 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.82 | 74.0 | 6.88e-01 | 100.0% | 79.2% |
| 3393324 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.82 | 74.0 | 7.34e-01 | 100.0% | 91.4% |
| 3580169 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.82 | 77.0 | 5.96e-01 | 100.0% | 55.5% |
| 4075688 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.82 | 77.0 | 5.60e-01 | 100.0% | 42.4% |
| 3565765 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.81 | 73.0 | 6.41e-01 | 100.0% | 67.9% |
| 3504269 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.81 | 76.0 | 7.38e-01 | 100.0% | 90.9% |
| 3911228 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.81 | 73.0 | 7.08e-01 | 100.0% | 86.4% |
| 3366163 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 75.0 | 6.26e-01 | 99.0% | 66.9% |
| 3599041 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 74.0 | 6.40e-01 | 98.0% | 75.9% |
| 3609631 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.80 | 73.0 | 6.30e-01 | 98.0% | 73.3% |
| 3939634 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.80 | 75.0 | 7.12e-01 | 100.0% | 90.4% |
| 3496934 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.79 | 74.0 | 6.54e-01 | 100.0% | 71.4% |
| 4510334 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.78 | 74.0 | 6.75e-01 | 100.0% | 80.8% |
| 4026269 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.77 | 72.0 | 6.36e-01 | 100.0% | 77.1% |
| 3558931 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.77 | 73.0 | 6.08e-01 | 100.0% | 73.8% |
| 3620357 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.75 | 61.0 | 5.79e-01 | 95.0% | 73.3% |
| 3463367 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.73 | 44.0 | 4.77e-01 | 79.0% | 70.6% |
| 5036328 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 52.0 | 5.58e-01 | 79.0% | 96.5% |
| 4141240 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.68 | 48.0 | 5.36e-01 | 81.0% | 92.5% |
| 3256260 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 53.0 | 5.21e-01 | 83.0% | 92.4% |
| 4683474 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.66 | 47.0 | 5.16e-01 | 81.0% | 92.5% |
| 5028838 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 49.0 | 5.22e-01 | 83.0% | 98.8% |
| 4200272 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.62 | 43.0 | 4.51e-01 | 99.0% | 80.0% |
| 3936025 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.60 | 51.0 | 5.12e-01 | 93.0% | 92.0% |
| 4964966 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.58 | 52.0 | 4.50e-01 | 100.0% | 87.1% |
| 5031245 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.54 | 48.0 | 4.22e-01 | 100.0% | 92.0% |
| 3366703 | 2.1.1.157 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 | 0.53 | 39.0 | 3.63e-01 | 80.0% | 68.1% |