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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00493
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00493
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-193
Domain cluster:
rep: aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00058__D12-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03808.20 best | Glyco_tran_WecG | 105.3 | 4.40e-30 | 69.7% | 75.6% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bedA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.72 | 36.0 | 4.26e-01 | 87.2% | 67.7% |
| 5wq5A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 41.0 | 4.47e-01 | 96.3% | 69.2% |
| 3gdwB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.69 | 36.0 | 4.13e-01 | 86.7% | 67.4% |
| 3i0zA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.66 | 37.0 | 3.83e-01 | 94.1% | 56.8% |
| 3pi7A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 41.0 | 4.52e-01 | 93.1% | 78.2% |
| 4kvfA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 35.0 | 3.79e-01 | 92.0% | 60.6% |
| 4c7oA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 44.0 | 4.35e-01 | 92.0% | 66.5% |
| 4ncbA05 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 37.0 | 4.11e-01 | 93.6% | 72.8% |
| 7xc2A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 44.0 | 4.67e-01 | 94.1% | 80.0% |
| 7en7A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 35.0 | 3.60e-01 | 79.3% | 55.4% |
| 1xmxA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.62 | 38.0 | 4.33e-01 | 87.2% | 81.0% |
| 4ceiB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 43.0 | 4.38e-01 | 83.5% | 75.6% |
| 2be7A01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.59 | 40.0 | 4.34e-01 | 94.1% | 82.8% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 45.0 | 4.49e-01 | 94.1% | 77.0% |
| 3eyeA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.59 | 34.0 | 3.71e-01 | 85.6% | 67.3% |
| 4f2gA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.58 | 38.0 | 4.23e-01 | 83.5% | 83.0% |
| 1gkuB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 47.0 | 4.56e-01 | 94.1% | 77.0% |
| 1c4oA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 4.55e-01 | 92.6% | 91.5% |
| 2npnA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.57 | 38.0 | 4.43e-01 | 85.6% | 97.7% |
| 2c2xA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.56 | 35.0 | 3.85e-01 | 93.1% | 74.7% |
| 5yvrA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 41.0 | 4.06e-01 | 96.3% | 71.6% |
| 3imkA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 43.0 | 4.59e-01 | 83.5% | 96.2% |
| 7zp2C02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.54 | 38.0 | 4.09e-01 | 94.1% | 84.6% |
| 3dl2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 32.0 | 3.65e-01 | 86.7% | 77.0% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.53 | 34.0 | 3.86e-01 | 93.6% | 82.1% |
| 4ix1A00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 48.0 | 4.48e-01 | 100.0% | 85.9% |
| 2xdqA03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 31.0 | 3.69e-01 | 89.4% | 88.7% |
| 4bgdA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 4.03e-01 | 85.6% | 89.7% |
| 1qrsA05 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 33.0 | 3.87e-01 | 87.2% | 99.2% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.50 | 40.0 | 4.23e-01 | 84.6% | 94.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031610 | 2007.1.2.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Glyco_tran_WecG | 0.93 | 88.0 | 8.23e-01 | 100.0% | 83.6% |
| 4510662 | 2007.1.2.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Glyco_tran_WecG | 0.88 | 83.0 | 8.07e-01 | 100.0% | 89.8% |
| 4456356 | 2007.1.2.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Glyco_tran_WecG | 0.86 | 76.0 | 7.05e-01 | 100.0% | 75.2% |
| 3941532 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.71 | 36.0 | 4.20e-01 | 86.7% | 68.5% |
| 3989133 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.68 | 35.0 | 4.00e-01 | 86.7% | 64.8% |
| 4266448 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.68 | 41.0 | 5.10e-01 | 93.1% | 98.3% |
| 4989687 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 48.0 | 4.64e-01 | 94.1% | 66.0% |
| 4576763 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.65 | 36.0 | 3.13e-01 | 87.8% | 34.8% |
| 3172445 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.64 | 44.0 | 4.58e-01 | 97.3% | 73.3% |
| 4650998 | 3755.3.1.562 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Exonuc_VII_L | 0.62 | 37.0 | 3.32e-01 | 72.3% | 42.3% |
| 3252602 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.60 | 43.0 | 2.94e-01 | 94.1% | 20.6% |
| 4935979 | 2004.1.1.90 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobA_CobO_BtuR | 0.60 | 43.0 | 4.47e-01 | 88.3% | 78.3% |
| 4950698 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.60 | 44.0 | 4.39e-01 | 94.7% | 72.3% |
| 4934461 | 2003.1.7.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom | 0.59 | 39.0 | 3.96e-01 | 79.8% | 65.9% |
| 4999732 | 4002.1.1.5 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › ADH_Fe_C | 0.58 | 41.0 | 3.19e-01 | 97.3% | 32.8% |
| 4954355 | 2007.1.8.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 | 0.58 | 36.0 | 4.31e-01 | 93.6% | 92.8% |
| 4404034 | 2007.1.8.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 | 0.58 | 37.0 | 4.43e-01 | 95.7% | 98.3% |
| 3657613 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.58 | 40.0 | 4.17e-01 | 79.8% | 74.4% |
| 4025345 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.57 | 44.0 | 3.73e-01 | 92.0% | 48.7% |
| 4028164 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 43.0 | 3.24e-01 | 85.1% | 34.4% |
| 3734245 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.54 | 44.0 | 4.32e-01 | 93.6% | 78.5% |
| 4447276 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.54 | 43.0 | 3.68e-01 | 84.0% | 73.7% |
| 3971383 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.54 | 35.0 | 3.80e-01 | 70.7% | 78.1% |
| 5073396 | 7510.1.1.0 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like | 0.54 | 37.0 | 4.07e-01 | 84.0% | 88.3% |
| 4090348 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.53 | 47.0 | 4.14e-01 | 94.1% | 77.0% |
| 5040082 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.53 | 36.0 | 4.17e-01 | 87.2% | 96.3% |
| 3612550 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.53 | 48.0 | 4.37e-01 | 97.3% | 80.0% |
| 5069049 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.53 | 46.0 | 4.04e-01 | 94.1% | 85.4% |
| 3302981 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 24.0 | 3.12e-01 | 74.5% | 76.2% |
| 4629816 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.51 | 41.0 | 3.57e-01 | 85.1% | 74.8% |