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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00507

Bact-Vir

PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00507

Identity

Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.61 54.0 4.21e-01 98.3% 57.6%
2hzpA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 46.0 3.30e-01 83.1% 56.3%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.58 42.0 4.00e-01 78.0% 85.9%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.57 34.0 3.54e-01 71.2% 63.2%
1vyiA00 1.20.120.820 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain 0.54 43.0 3.46e-01 84.7% 94.6%
3guxA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 37.0 2.60e-01 83.1% 88.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631757 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.72 64.0 3.71e-01 96.6% 36.8%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 59.0 5.11e-01 96.6% 61.1%
3608575 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 37.0 2.98e-01 72.9% 27.2%
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.67 57.0 3.59e-01 96.6% 48.6%
3333193 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.64 54.0 4.26e-01 88.1% 82.7%
None — 0.64 59.0 3.47e-01 100.0% 60.5%
4023956 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.63 56.0 4.27e-01 96.6% 50.8%
3722969 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.63 56.0 4.04e-01 98.3% 50.0%
3409778 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 53.0 4.14e-01 100.0% 43.8%
3530175 2485.1.1.40 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 0.62 44.0 3.55e-01 76.3% 83.3%
3519143 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.61 52.0 3.33e-01 98.3% 83.0%
3937938 109.4.1.47 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.61 51.0 2.76e-01 91.5% 6.3%
4245032 192.11.1.2 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C 0.60 45.0 3.14e-01 83.1% 65.7%
3781870 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.58 45.0 3.91e-01 81.4% 83.5%
3469643 103.12.1.11 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › Intron_maturas2 0.58 40.0 4.06e-01 72.9% 80.0%
3342840 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 40.0 2.87e-01 78.0% 22.7%
3661638 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.57 42.0 3.56e-01 79.7% 48.4%
4944834 3625.1.1.0 ↗ alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.55 34.0 2.76e-01 83.1% 32.7%
3689071 58.2.1.1 ↗ beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.55 42.0 2.85e-01 88.1% 70.9%
3924318 6166.1.1.0 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.54 49.0 3.33e-01 98.3% 70.8%
4087557 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 42.0 2.62e-01 83.1% 32.2%
4958620 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 38.0 2.43e-01 78.0% 37.4%
4489568 140.1.1.21 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e, CysS_C 0.53 43.0 2.98e-01 89.8% 51.5%
3260653 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.51 36.0 3.14e-01 74.6% 92.6%
3214114 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.59e-01 76.3% 73.0%
4250601 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 36.0 2.57e-01 74.6% 58.8%
4441043 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 36.0 2.62e-01 74.6% 62.5%
5003382 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.50 35.0 2.41e-01 72.9% 48.7%