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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00539
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00539
Identity
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-89
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.67 | 51.0 | 5.00e-01 | 82.0% | 100.0% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 4.02e-01 | 75.4% | 87.0% |
| 3axbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 37.0 | 2.57e-01 | 75.4% | 62.1% |
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 39.0 | 3.72e-01 | 78.7% | 67.1% |
| 4iq0C02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 44.0 | 3.26e-01 | 100.0% | 66.9% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 3.65e-01 | 77.0% | 71.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989485 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 42.0 | 4.52e-01 | 75.4% | 90.0% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.59 | 42.0 | 3.58e-01 | 91.8% | 46.9% |
| 3616640 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 41.0 | 3.38e-01 | 80.3% | 42.9% |
| 4024913 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 38.0 | 3.80e-01 | 72.1% | 64.6% |
| 3732172 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.56 | 48.0 | 4.25e-01 | 100.0% | 80.0% |
| 3936491 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.56 | 47.0 | 4.12e-01 | 100.0% | 76.0% |
| 3779830 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.54 | 38.0 | 3.37e-01 | 75.4% | 62.2% |
| 4954496 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.52 | 36.0 | 3.33e-01 | 73.8% | 95.0% |
| 4337890 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 63.3% |
| 3415045 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 35.0 | 3.41e-01 | 90.2% | 64.3% |