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PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00606
Bact-VirPLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00606
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-163
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1txkA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.73 | 51.0 | 3.52e-01 | 71.6% | 83.3% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.71 | 58.0 | 6.08e-01 | 100.0% | 94.3% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.68 | 49.0 | 3.55e-01 | 74.1% | 35.7% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.65 | 59.0 | 4.41e-01 | 100.0% | 99.7% |
| 7vu0A01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.65 | 46.0 | 3.12e-01 | 73.3% | 44.3% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 46.0 | 3.45e-01 | 73.3% | 95.4% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.64 | 44.0 | 3.62e-01 | 70.7% | 60.0% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.63 | 56.0 | 4.35e-01 | 96.6% | 97.6% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 47.0 | 4.38e-01 | 81.9% | 63.0% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 54.0 | 5.03e-01 | 100.0% | 75.4% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 44.0 | 4.15e-01 | 73.3% | 96.4% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 45.0 | 3.96e-01 | 75.9% | 88.2% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 48.0 | 4.28e-01 | 92.2% | 58.2% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 50.0 | 4.64e-01 | 94.0% | 69.9% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.61 | 43.0 | 3.84e-01 | 74.1% | 75.3% |
| 1e54A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 53.0 | 3.90e-01 | 99.1% | 97.9% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 41.0 | 3.08e-01 | 72.4% | 93.0% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.58 | 41.0 | 3.21e-01 | 72.4% | 89.8% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 49.0 | 3.41e-01 | 91.4% | 94.6% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 41.0 | 4.02e-01 | 72.4% | 97.6% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.58 | 52.0 | 3.70e-01 | 100.0% | 95.4% |
| 6i7sG01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.58 | 49.0 | 3.86e-01 | 94.8% | 86.3% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 4.60e-01 | 85.3% | 90.0% |
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 37.0 | 3.96e-01 | 84.5% | 74.3% |
| 2porA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.57 | 49.0 | 3.61e-01 | 93.1% | 96.3% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 4.58e-01 | 89.7% | 82.9% |
| 1c7hA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 4.58e-01 | 87.1% | 89.4% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.57 | 49.0 | 3.69e-01 | 94.8% | 96.9% |
| 4qfwA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.57 | 40.0 | 3.10e-01 | 72.4% | 90.1% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 4.60e-01 | 91.4% | 92.3% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.56 | 50.0 | 3.44e-01 | 96.6% | 45.6% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.96e-01 | 83.6% | 98.7% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 50.0 | 4.58e-01 | 100.0% | 79.1% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 4.23e-01 | 85.3% | 91.6% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 4.39e-01 | 90.5% | 87.2% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 45.0 | 4.39e-01 | 88.8% | 96.8% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 4.28e-01 | 84.5% | 95.0% |
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 32.0 | 3.41e-01 | 74.1% | 68.4% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 2.90e-01 | 72.4% | 88.8% |
| 1c8uA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 38.0 | 3.42e-01 | 74.1% | 94.9% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.52 | 41.0 | 3.90e-01 | 83.6% | 91.9% |
| 1v7wA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 46.0 | 3.38e-01 | 97.4% | 67.2% |
| 3s4kA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.55e-01 | 72.4% | 98.4% |
| 6jqlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 3.11e-01 | 70.7% | 85.4% |
| 2ownA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 39.0 | 3.02e-01 | 79.3% | 71.9% |
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.51 | 45.0 | 3.69e-01 | 95.7% | 65.4% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 38.0 | 3.42e-01 | 100.0% | 56.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027751 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.70 | 64.0 | 5.82e-01 | 99.1% | 100.0% |
| 1312446 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.68 | 49.0 | 3.55e-01 | 74.1% | 35.7% |
| 4667155 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.67 | 62.0 | 5.83e-01 | 100.0% | 87.7% |
| 3164364 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.65 | 60.0 | 4.45e-01 | 100.0% | 89.3% |
| 200993 | 5084.9.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR | 0.65 | 59.0 | 4.41e-01 | 100.0% | 99.7% |
| 3395729 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.65 | 52.0 | 4.63e-01 | 84.5% | 98.8% |
| 3838584 | 5084.5.1.25 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 | 0.64 | 56.0 | 3.72e-01 | 94.0% | 91.9% |
| 3495055 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.64 | 57.0 | 4.33e-01 | 97.4% | 90.4% |
| 3385752 | 5084.5.4.7 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF2860 | 0.62 | 52.0 | 3.87e-01 | 89.7% | 92.4% |
| 3559721 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.62 | 50.0 | 4.26e-01 | 86.2% | 98.9% |
| 3740523 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.60 | 48.0 | 4.31e-01 | 86.2% | 99.4% |
| 3983528 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.60 | 54.0 | 4.25e-01 | 100.0% | 80.6% |
| 4100165 | 5084.8.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher_TcfC | 0.60 | 51.0 | 3.34e-01 | 90.5% | 91.4% |
| 3229636 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.59 | 48.0 | 4.10e-01 | 86.2% | 89.2% |
| 3478508 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.59 | 48.0 | 4.25e-01 | 87.1% | 90.0% |
| 4883232 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.59 | 41.0 | 3.08e-01 | 71.6% | 93.2% |
| 3550298 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.59 | 48.0 | 4.11e-01 | 86.2% | 91.1% |
| 2462280 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.59 | 50.0 | 4.30e-01 | 92.2% | 72.0% |
| 4285781 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.58 | 41.0 | 3.11e-01 | 73.3% | 83.8% |
| 3975988 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.58 | 53.0 | 4.04e-01 | 100.0% | 88.8% |
| 1413889 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.58 | 37.0 | 4.13e-01 | 84.5% | 82.4% |
| 3252422 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.58 | 48.0 | 4.14e-01 | 92.2% | 77.4% |
| 3978431 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.57 | 52.0 | 4.06e-01 | 100.0% | 90.0% |
| 3385986 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.57 | 53.0 | 4.39e-01 | 100.0% | 96.5% |
| 3644309 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.57 | 50.0 | 3.69e-01 | 96.6% | 87.4% |
| 3974176 | 5084.8.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore | 0.57 | 48.0 | 3.22e-01 | 90.5% | 90.2% |
| 4034405 | 5084.5.2.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like | 0.56 | 50.0 | 3.35e-01 | 97.4% | 90.4% |
| 4008277 | 5084.5.1.62 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 | 0.56 | 50.0 | 3.62e-01 | 97.4% | 46.6% |
| 4028409 | 243.9.1.0 ↗ | a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related | 0.56 | 43.0 | 3.66e-01 | 81.9% | 96.8% |
| 4199183 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 49.0 | 4.57e-01 | 100.0% | 95.9% |
| 3707067 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 46.0 | 3.69e-01 | 90.5% | 78.2% |
| 4966638 | 881.1.1.44 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 | 0.53 | 45.0 | 3.91e-01 | 96.6% | 74.9% |
| 4955361 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 41.0 | 3.15e-01 | 81.0% | 93.3% |
| 4000635 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.52 | 47.0 | 4.05e-01 | 100.0% | 78.3% |
| 5005014 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 42.0 | 3.45e-01 | 89.7% | 80.4% |
| 3999398 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 40.0 | 3.74e-01 | 84.5% | 94.7% |
| 4997740 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.52 | 41.0 | 3.89e-01 | 85.3% | 81.4% |
| 3453150 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.52 | 46.0 | 3.93e-01 | 100.0% | 81.0% |
| 3537631 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.51 | 46.0 | 3.96e-01 | 100.0% | 75.7% |
| 5047424 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.51 | 40.0 | 4.00e-01 | 84.5% | 84.2% |
| 5047928 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.51 | 40.0 | 4.00e-01 | 85.3% | 85.0% |
| 3614126 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.50 | 47.0 | 3.85e-01 | 100.0% | 74.5% |
| 4023996 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.50 | 44.0 | 3.90e-01 | 100.0% | 78.9% |
| 3181792 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.50 | 44.0 | 3.77e-01 | 100.0% | 75.0% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.50 | 39.0 | 3.96e-01 | 82.8% | 84.3% |