←Back to structures
PP028463.1__WQZ01562.1__DDLHHHOO_00074__00073
Bact-VirPP028463.1__WQZ01562.1__DDLHHHOO_00074__00073
Identity
- Accession:
- PP028463 ↗
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Taxonomy
TaxID: 3110518
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-110
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 40.0 | 3.19e-01 | 75.5% | 88.7% |
| 3zt9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 38.0 | 3.19e-01 | 75.5% | 91.1% |
| 3lzqA00 | 2.60.40.2480 | Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type | 0.51 | 40.0 | 3.65e-01 | 87.3% | 93.0% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.50 | 32.0 | 3.26e-01 | 82.7% | 65.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4193378 | 2484.1.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 | 0.53 | 43.0 | 3.94e-01 | 86.4% | 71.0% |
| 3819824 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 38.0 | 2.94e-01 | 76.4% | 83.1% |
| 3437304 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 34.0 | 3.63e-01 | 86.4% | 75.8% |
| 4138832 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.52 | 28.0 | 3.06e-01 | 71.8% | 61.8% |
| 3817465 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 35.0 | 3.67e-01 | 73.6% | 78.0% |
| 3447632 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 37.0 | 3.29e-01 | 79.1% | 75.9% |
D2
medium
residues 111-176
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22768.2 best | SPP1_Dit | 43.4 | 4.40e-11 | 95.5% | 61.9% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1opcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.58e-01 | 77.3% | 96.0% |
| 4uhtA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.35e-01 | 74.2% | 94.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888733 | 10.29.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C | 0.75 | 62.0 | 5.43e-01 | 97.0% | 60.6% |
| 3593362 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.60 | 38.0 | 3.47e-01 | 74.2% | 49.4% |
| 4113536 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.57 | 43.0 | 3.25e-01 | 80.3% | 46.9% |
| 3266673 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 38.0 | 2.51e-01 | 72.7% | 16.8% |
| 3775796 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 38.0 | 2.85e-01 | 72.7% | 51.7% |
| 3234953 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.55 | 45.0 | 3.19e-01 | 92.4% | 65.1% |
| 4336160 | 319.1.1.21 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › GvpH | 0.53 | 39.0 | 3.69e-01 | 80.3% | 81.2% |
| 5025277 | 284.1.1.13 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N | 0.53 | 37.0 | 3.99e-01 | 84.8% | 90.9% |
| 1923800 | 1121.1.1.1 ↗ | alpha superhelices › Hypothetical protein SF216 › Hypothetical protein SF216 › Hypothetical protein SF216 › DUF6971 | 0.52 | 42.0 | 3.65e-01 | 92.4% | 88.2% |