←Back to structures

PP034390.1__WRW34706.1__CF5_0001__00001

Bact-Vir

PP034390.1__WRW34706.1__CF5_0001__00001

Identity

Accession:
PP034390 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_CF5

TaxID: 3113739

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: rep: PP034390.1__WRW34702.1__CF5_0015__00015__D2-64
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 54.0 5.29e-01 86.3% 85.7%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 48.0 3.79e-01 80.4% 41.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 53.0 3.57e-01 100.0% 41.6%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.64 51.0 4.18e-01 94.1% 80.4%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 43.0 3.13e-01 72.5% 59.6%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 51.0 4.38e-01 100.0% 61.5%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 47.0 3.59e-01 88.2% 57.4%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 43.0 3.39e-01 74.5% 95.5%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 48.0 4.17e-01 90.2% 94.0%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 47.0 4.45e-01 84.3% 88.5%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 42.0 3.58e-01 82.4% 41.5%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 46.0 3.69e-01 84.3% 92.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 43.0 2.74e-01 80.4% 92.2%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 44.0 3.52e-01 84.3% 93.6%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 47.0 4.31e-01 92.2% 87.0%
2rlpA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 42.0 3.93e-01 82.4% 82.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.57 43.0 3.40e-01 84.3% 73.1%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.57 44.0 3.55e-01 86.3% 48.6%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 44.0 4.26e-01 84.3% 93.1%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 39.0 2.76e-01 72.5% 25.0%
5aykA05 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 38.0 3.15e-01 72.5% 77.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.57e-01 100.0% 38.7%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 42.0 3.33e-01 86.3% 61.2%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.02e-01 100.0% 23.8%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 43.0 3.49e-01 86.3% 96.2%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 44.0 3.18e-01 96.1% 48.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 37.0 3.89e-01 80.4% 85.7%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 3.48e-01 94.1% 55.1%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 36.0 2.95e-01 70.6% 89.8%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 38.0 3.05e-01 82.4% 76.6%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 3.02e-01 82.4% 74.2%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 3.06e-01 82.4% 73.0%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 44.0 2.95e-01 100.0% 90.5%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 43.0 3.51e-01 100.0% 57.0%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 45.0 3.48e-01 100.0% 76.2%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.52 42.0 3.52e-01 100.0% 69.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.75e-01 96.1% 92.4%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.87e-01 100.0% 98.5%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 2.89e-01 86.3% 89.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 41.0 2.74e-01 96.1% 91.4%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.51 36.0 2.18e-01 76.5% 21.4%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 38.0 3.36e-01 86.3% 85.5%
2b5iD01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 38.0 3.60e-01 88.2% 86.6%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.22e-01 100.0% 51.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932458 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 51.0 3.20e-01 84.3% 20.0%
5072327 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 3.71e-01 82.4% 30.4%
1007 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.65 44.0 4.71e-01 80.4% 87.8%
3723542 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 49.0 3.82e-01 86.3% 53.7%
4259152 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.64 49.0 3.91e-01 84.3% 94.3%
1868024 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.63 43.0 4.63e-01 80.4% 87.8%
5079606 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 48.0 3.49e-01 88.2% 50.6%
3315197 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.63 51.0 3.73e-01 92.2% 90.3%
None — 0.62 42.0 2.61e-01 72.5% 31.5%
4399997 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.62 46.0 3.42e-01 86.3% 52.0%
3181584 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.61 52.0 4.11e-01 100.0% 60.9%
3232262 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.61 51.0 4.13e-01 100.0% 81.8%
4929704 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.61 47.0 3.44e-01 84.3% 89.3%
4366164 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 43.0 2.55e-01 74.5% 32.9%
4927827 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.60 47.0 3.86e-01 86.3% 98.0%
3238130 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.60 45.0 3.21e-01 80.4% 87.6%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 50.0 3.86e-01 100.0% 50.0%
136402 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.60 42.0 4.46e-01 80.4% 90.5%
4081039 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.60 46.0 4.17e-01 82.4% 81.4%
5056156 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 48.0 4.30e-01 94.1% 97.3%
3960379 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.59 45.0 3.84e-01 86.3% 76.7%
3480221 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 40.0 3.72e-01 74.5% 56.9%
5060117 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 46.0 4.10e-01 94.1% 80.0%
4937958 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 46.0 2.81e-01 90.2% 48.6%
4370678 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 39.0 2.43e-01 72.5% 30.6%
None — 0.56 42.0 2.55e-01 84.3% 34.0%
4152365 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.56 40.0 4.20e-01 88.2% 86.7%
4958458 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 43.0 3.24e-01 84.3% 96.9%
167574 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.56 41.0 3.16e-01 82.4% 67.9%
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.55 42.0 3.43e-01 90.2% 65.2%
4517015 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.55 41.0 3.20e-01 82.4% 72.6%
4226159 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 41.0 3.61e-01 80.4% 85.3%
5064066 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.55 43.0 4.00e-01 88.2% 97.1%
309454 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 37.0 2.85e-01 72.5% 84.1%
4948360 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 40.0 3.10e-01 82.4% 69.8%
4456195 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 39.0 3.13e-01 82.4% 74.2%
4936050 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 40.0 3.16e-01 86.3% 74.4%
2588759 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 39.0 3.08e-01 82.4% 74.4%
3625037 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 38.0 2.97e-01 82.4% 75.6%
2392242 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.53 39.0 3.17e-01 84.3% 73.5%
3520053 7590.1.1.3 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid 0.53 39.0 2.79e-01 84.3% 31.4%
3244229 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 39.0 3.06e-01 84.3% 76.8%
1290662 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 38.0 2.89e-01 82.4% 66.4%
3604406 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.52 38.0 2.79e-01 82.4% 68.2%
4991675 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 39.0 3.08e-01 86.3% 74.4%
3790774 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.30e-01 96.1% 57.5%
5074320 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 38.0 2.95e-01 82.4% 73.8%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 38.0 2.95e-01 84.3% 71.1%
5056758 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 38.0 3.07e-01 84.3% 77.4%
426904 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.52 37.0 3.02e-01 84.3% 74.8%
3989004 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 43.0 2.70e-01 96.1% 40.6%
5011281 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 37.0 2.97e-01 84.3% 72.8%
4929645 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 36.0 2.90e-01 80.4% 65.6%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 39.0 2.87e-01 86.3% 61.7%
3550232 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.51 42.0 3.60e-01 94.1% 85.9%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 38.0 3.03e-01 86.3% 77.5%
5010672 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 37.0 2.99e-01 86.3% 77.5%
3276550 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.50 37.0 3.18e-01 84.3% 59.1%
3507499 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.50 36.0 2.81e-01 82.4% 69.6%
D2 high residues 62-119
PDB
Domain cluster: rep: PP034390.1__WRW34702.1__CF5_0015__00015__D70-126
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.73 63.0 5.26e-01 96.6% 85.0%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.71 50.0 3.81e-01 75.9% 71.9%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.67 56.0 4.23e-01 94.8% 97.9%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.66 48.0 4.97e-01 77.6% 92.5%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 44.0 2.76e-01 72.4% 100.0%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.64 55.0 4.06e-01 98.3% 65.8%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 4.15e-01 100.0% 84.1%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 4.14e-01 100.0% 62.6%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 3.79e-01 98.3% 69.6%
6kwzA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 53.0 4.54e-01 96.6% 85.7%
1eucB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 52.0 3.88e-01 94.8% 72.9%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 51.0 3.87e-01 94.8% 72.3%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 55.0 4.19e-01 98.3% 81.9%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.41e-01 96.6% 80.6%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 4.25e-01 96.6% 93.1%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 53.0 4.35e-01 96.6% 58.3%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 44.0 3.51e-01 77.6% 42.1%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 49.0 4.24e-01 87.9% 71.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 53.0 4.04e-01 100.0% 74.8%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.54e-01 96.6% 71.1%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 43.0 3.62e-01 77.6% 74.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.68e-01 96.6% 83.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.60 43.0 4.16e-01 75.9% 84.8%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.33e-01 96.6% 67.3%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.49e-01 96.6% 73.6%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 50.0 4.19e-01 96.6% 71.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 47.0 3.50e-01 91.4% 94.6%
5jeaC00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.60 50.0 3.18e-01 96.6% 34.7%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 45.0 3.63e-01 81.0% 77.5%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 43.0 4.16e-01 77.6% 96.9%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.18e-01 96.6% 65.0%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.59 49.0 3.33e-01 100.0% 68.7%
1x5hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 3.85e-01 96.6% 53.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 3.39e-01 82.8% 52.5%
1blwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.06e-01 96.6% 63.7%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.26e-01 96.6% 71.7%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.75e-01 100.0% 91.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.56e-01 77.6% 73.5%
3b83C00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.15e-01 96.6% 69.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.57 47.0 3.52e-01 98.3% 59.9%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.25e-01 77.6% 65.9%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 3.32e-01 84.5% 54.2%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.57 38.0 4.20e-01 70.7% 93.0%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.08e-01 96.6% 69.9%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.63e-01 81.0% 66.3%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 34.0 3.77e-01 93.1% 79.5%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.89e-01 96.6% 74.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 39.0 3.23e-01 77.6% 41.5%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 47.0 4.10e-01 98.3% 76.1%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.46e-01 100.0% 54.9%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 45.0 3.66e-01 98.3% 73.6%
3wihA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.99e-01 96.6% 76.1%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 38.0 3.71e-01 86.2% 68.2%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 35.0 3.06e-01 72.4% 70.5%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 40.0 2.60e-01 86.2% 37.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.81e-01 98.3% 38.6%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.35e-01 91.4% 49.1%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 3.16e-01 100.0% 61.2%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958897 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.71 55.0 4.35e-01 84.5% 73.3%
4995672 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 52.0 5.51e-01 81.0% 100.0%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.69 49.0 3.88e-01 75.9% 57.5%
4028488 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.67 56.0 4.32e-01 96.6% 69.3%
3508717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 56.0 5.29e-01 96.6% 98.6%
3178368 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.65 56.0 3.84e-01 100.0% 80.9%
4222495 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.65 54.0 4.40e-01 96.6% 76.5%
3901691 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 54.0 4.64e-01 96.6% 70.4%
1037154 1.1.5.34 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.64 55.0 4.11e-01 100.0% 81.4%
3338210 224.1.1.3 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.64 53.0 3.90e-01 96.6% 65.5%
4030365 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.64 52.0 4.32e-01 91.4% 54.3%
3738951 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.63 51.0 4.30e-01 96.6% 69.1%
3924126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.49e-01 96.6% 74.4%
4927529 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.62 54.0 4.51e-01 98.3% 97.1%
3788339 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 44.0 3.29e-01 75.9% 32.7%
3171621 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.23e-01 96.6% 68.7%
3956576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 54.0 4.08e-01 98.3% 87.1%
4025243 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 53.0 4.09e-01 100.0% 63.6%
3714025 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.60 43.0 3.13e-01 75.9% 31.2%
3573951 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 51.0 4.16e-01 96.6% 76.4%
3590928 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 43.0 4.23e-01 79.3% 73.8%
3392943 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 50.0 3.82e-01 96.6% 51.7%
3621748 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.59 50.0 3.75e-01 96.6% 74.7%
5068882 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.67e-01 100.0% 86.3%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.59 43.0 3.64e-01 79.3% 63.0%
3892161 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 50.0 3.90e-01 96.6% 52.3%
4991788 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 3.88e-01 96.6% 53.1%
5058821 11.1.1.351 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.58 48.0 4.24e-01 96.6% 70.0%
3268665 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.02e-01 100.0% 76.7%
3615394 11.1.4.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 0.58 48.0 3.96e-01 100.0% 77.5%
3268832 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 4.15e-01 100.0% 76.4%
1919639 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.57 47.0 4.09e-01 93.1% 61.5%
3920513 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 46.0 3.00e-01 96.6% 24.0%
4452137 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 41.0 3.20e-01 77.6% 75.6%
3526966 11.2.1.79 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CTSRT 0.56 49.0 3.70e-01 100.0% 69.0%
5073588 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.56 46.0 3.15e-01 100.0% 77.9%
3236126 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.55 45.0 3.68e-01 98.3% 90.4%
5058198 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 46.0 3.63e-01 94.8% 49.6%
3367533 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 41.0 2.95e-01 86.2% 37.0%
4175826 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.55 41.0 3.98e-01 81.0% 89.2%
2006900 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 41.0 3.40e-01 81.0% 57.7%
4204478 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.79e-01 96.6% 82.9%
3933691 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.54 44.0 3.41e-01 96.6% 66.9%
4956437 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 39.0 3.07e-01 79.3% 60.0%
3999432 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.53 45.0 3.30e-01 100.0% 65.1%
3655985 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.53 44.0 3.49e-01 94.8% 48.8%
4994977 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 40.0 3.09e-01 82.8% 35.8%
3992138 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.53 43.0 3.35e-01 100.0% 78.7%
3721305 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 40.0 3.49e-01 91.4% 55.3%
3567335 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.52 42.0 3.71e-01 96.6% 63.2%
3477707 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.52 39.0 3.04e-01 94.8% 94.9%
4135585 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.50 36.0 3.63e-01 77.6% 86.7%